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[174398_at]

Description C30948_rc /REP_DB=TREMBL Accession /GB=C30948 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk266d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 23      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 45      6grp_highest_sub > 02      6grp_cgc > 41      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 386.7
(3)
P 		240.1
(-0.9)
P 		159.8
(-3)
P 		194.4
(-2.1)
P 		227
B 355.9
(3)
P 		357.2
(3)
P 		252.7
(-0.8)
P 		193.5
(-3)
P 		164
C 333.7
(3)
P 		330
(2.8)
P 		281.5
(-0.1)
P 		232.1
(-3)
P 		102
avr 358.8
(3) 		309.1
(1) 		231.3
(-2) 		206.7
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 240.5
(-1.2)
P 		402.3
(3)
P 		301
(0.4)
P 		231.7
(-1.4)
P 		227.4
(-1.6)
P 		172.1
(-3)
P 		230
B 285.6
(1.3)
P 		349.9
(3)
P 		213.1
(-0.7)
P 		257.2
(0.5)
P 		219.1
(-0.5)
P 		127.8
(-3)
P 		222
C 394
(3)
P 		271.7
(-0)
P 		245.9
(-0.6)
P 		250
(-0.5)
P 		150.1
(-3)
P 		172.3
(-2.5)
P 		244
avr 306.7
(1.9) 		341.3
(3) 		253.3
(0.1) 		246.3
(-0.1) 		198.9
(-1.6) 		157.4
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 140.8
(3)
P 		52.1
(-1.7)
P 		41.8
(-2.3)
P 		28.4
(-3)
P 		112
B 113.5
(3)
P 		88.2
(0.9)
P 		58.6
(-1.6)
P 		41.2
(-3)
P 		72
C 110.5
(3)
P 		94.9
(1.7)
P 		98.1
(2)
P 		39.1
(-3)
P 		71
avr 121.6
(3) 		78.4
(-0) 		66.2
(-0.9) 		36.2
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 44.3
(-2.9)
P 		143.1
(3)
P 		65.6
(-1.6)
P 		58.8
(-2)
P 		68.6
(-1.4)
P 		41.9
(-3)
P 		101
B 99.4
(1.5)
P 		116.5
(3)
P 		51.7
(-2.7)
P 		68.1
(-1.2)
P 		89
(0.6)
P 		47.7
(-3)
P 		69
C 146
(3)
P 		82.9
(-0.9)
P 		62.6
(-2.1)
P 		50.3
(-2.9)
P 		48.6
(-3)
P 		57.7
(-2.4)
P 		97
avr 96.6
(1.4) 		114.2
(3) 		60
(-2) 		59.1
(-2.1) 		68.7
(-1.2) 		49.1
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21445
Sequence Type Exemplar sequence
Representative Public ID C30948 NCBI
Target Description C30948_rc /REP_DB=TREMBL Accession /GB=C30948 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk266d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068898 NCBI Caenorhabditis elegans Resistance to Inhibitors of Cholinesterase family member (ric-3) (ric-3) mRNA, complete cds. 11/11 None
T14A8.1 ENSEMBL cdna:known chromosome:CEL140:IV:7818234:7821144:1 gene:T14A8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7820816-7821115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ric-3
Ensembl T14A8.1
Entrez Gene 177570 Entrez gene
SwissProt Q22472 EMBL-EBI
WormBase CE27448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93437 Resistance to inhibitors of cholinesterase protein 3 [Caenorhabditis elegans] ref|NP_501299.1| Resistance to Inhibitors of Cholinesterase family member (ric-3) [Caenorhabditis elegans] 1.0E-104
blast CAE70892 Hypothetical protein CBG17683 [Caenorhabditis briggsae] 7.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501299.1 2 44-66,125-147
T14A8.1 2 44-66,125-147
Sequence
Target Sequence 
>C. ELEGANS:174398_AT
caaaccctcaaataattgccgccacctctttcatttaatttcaaaaaccacgagccaaca
aattataataatttgatatatttccacaaaatctcgccttcattgcgtgtattttataat
catggatacggtatccatatagttatagtacacacaccttctcttcctcaactttcattt
cattttttatttaaactccgatattttaacaacagtgtgtcaattcaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACCCTCAAATAATTGCCGCCAC 272 191 39 Antisense
GCCACCTCTTTCATTTAATTTCAAA 64 281 59 Antisense
CAAAAACCACGAGCCAACAAATTAT 72 189 80 Antisense
TATATTTCCACAAAATCTCGCCTTC 32 663 115 Antisense
AAATCTCGCCTTCATTGCGTGTATT 151 119 127 Antisense
GCCTTCATTGCGTGTATTTTATAAT 168 281 134 Antisense
GGATACGGTATCCATATAGTTATAG 81 509 162 Antisense
TAGTTATAGTACACACACCTTCTCT 44 653 178 Antisense
TCATTTTTTATTTAAACTCCGATAT 21 619 218 Antisense
AACTCCGATATTTTAACAACAGTGT 611 141 232 Antisense
ACAACAGTGTGTCAATTCAATTCAA 107 111 247 Antisense
Sequence Source Affymetrix Proprietary Database