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[174397_at] Yeast YIK9 like

Description CEK002D4R_rc /REP_DB=TREMBL Accession /GB=D27680 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk2d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 75      6grp_total > 46      4grp_total > 40      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 733
1 2 3 4 range
A 854.8
(0.1)
P 		477.3
(-3)
P 		1210.2
(3)
P 		617.7
(-1.9)
P 		733
B 764.2
(-0.9)
P 		934.2
(2)
P 		642.9
(-3)
P 		993.4
(3)
P 		351
C 759.6
(-1)
P 		614.3
(-3)
P 		1054.7
(3)
P 		718
(-1.6)
P 		440
avr 792.9
(-0.6) 		675.3
(-3) 		969.3
(3) 		776.4
(-0.9) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 697
1 2 3 4 5 6 range
A 615.1
(-1.8)
P 		779.2
(2.5)
P 		719.5
(0.9)
P 		570.7
(-3)
P 		797.3
(3)
P 		781.1
(2.6)
P 		227
B 1020
(0.5)
P 		1268.1
(3)
P 		891.7
(-0.8)
P 		915.6
(-0.6)
P 		675.6
(-3)
P 		1020.2
(0.5)
P 		593
C 834.3
(-1)
P 		1224.7
(3)
P 		753.7
(-1.8)
P 		1094.3
(1.7)
P 		638.7
(-3)
P 		1052.6
(1.2)
P 		586
avr 823.1
(-1.2) 		1090.7
(3) 		788.3
(-1.7) 		860.2
(-0.6) 		703.9
(-3) 		951.3
(0.8) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 311.2
(2.9)
P 		103.6
(-2.6)
P 		316.4
(3)
P 		90.4
(-3)
P 		226
B 243.7
(3)
P 		230.7
(2.2)
P 		149
(-3)
P 		211.7
(1)
P 		95
C 251.5
(0.2)
P 		176.6
(-1.6)
P 		367.6
(3)
P 		121.1
(-3)
P 		247
avr 268.8
(2.6) 		170.3
(-1.7) 		277.7
(3) 		141.1
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 113.4
(-3)
P 		277.1
(3)
P 		156.7
(-1.4)
P 		144.7
(-1.9)
P 		240.6
(1.7)
P 		190.2
(-0.2)
P 		164
B 354.9
(1)
P 		422.1
(3)
P 		216.5
(-3)
P 		242.5
(-2.2)
P 		274.5
(-1.3)
P 		380.4
(1.8)
P 		206
C 309.2
(0.9)
P 		373.7
(3)
P 		191.8
(-3)
P 		220.1
(-2.1)
P 		206.7
(-2.5)
P 		352.4
(2.3)
P 		182
avr 259.2
(-0.5) 		357.6
(3) 		188.3
(-3) 		202.4
(-2.5) 		240.6
(-1.1) 		307.7
(1.2) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21434
Sequence Type Exemplar sequence
Representative Public ID CEK002D4R NCBI
Target Description CEK002D4R_rc /REP_DB=TREMBL Accession /GB=D27680 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk2d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069953 NCBI Caenorhabditis elegans yeast SEC homolog family member (sec-24.2) (sec-24.2) mRNA, complete cds. 11/11 None
ZC518.2 ENSEMBL cdna:known chromosome:CEL140:IV:12355593:12360761:-1 gene:ZC518.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12355612-12356096(-) 95.9 99.18
Public Domain and Genome References
Gene Title Yeast YIK9 like
Gene Symbol sec-24.2
Ensembl ZC518.2
Entrez Gene 178183 Entrez gene
SwissProt Q23368 EMBL-EBI
WormBase CE32286 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258829_AT protein transport protein Sec24, putative at
CANINE_2:CFAAFFX.2443.1.S1_AT similar to Protein transport protein Sec24A (SEC24-related protein A) cfa
CANINE_2:CFAAFFX.2445.1.S1_AT similar to Protein transport protein Sec24A (SEC24-related protein A) cfa
CHICKEN:GGA.11576.2.S1_A_AT SEC24 related gene family, member A (S. cerevisiae) gga
CHICKEN:GGA.11576.2.S1_S_AT SEC24 related gene family, member A (S. cerevisiae) gga
CHICKEN:GGA.17574.1.S1_S_AT SEC24 related gene family, member A (S. cerevisiae) gga
HG-U95AV2:34199_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBA:RC_AA278134_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBA:R31745_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBB:RC_T91715_F_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBD:RC_T79444_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBD:RC_H64780_F_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.211612.0.S1_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.134218.0.A1_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A_2:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:244841_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133B:244841_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U95D:78591_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.211612.0.S2_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A_2:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
MG-U74BV2:114800_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOE430B:1433934_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOUSE430_2:1433934_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOE430B:1438121_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOUSE430_2:1438121_AT SEC24 related gene family, member A (S. cerevisiae) mm
MU19KSUBC:TC41242_AT SEC24 related gene family, member A (S. cerevisiae) (Sec24a), mRNA mm
RG-U34B:RC_AA946068_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RAE230A:1389383_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RAT230_2:1389383_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI171975_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30127 COPII vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92988 Hypothetical protein ZC518.2 [Caenorhabditis elegans] ref|NP_502354.2| yeast SEC homolog family member (sec-24.2) [Caenorhabditis elegans] 0.0
blast CAE59844 Hypothetical protein CBG03317 [Caenorhabditis briggsae] 0.0
blast NP_006314 SEC24 (S. cerevisiae) homolog B [Homo sapiens] emb|CAA10335.1| Sec24B protein [Homo sapiens] sp|O95487|SC24B_HUMAN Protein transport protein Sec24B (SEC24-related protein B) 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR006895 EMBL-EBI Sec23/Sec24 zinc finger 2.0E-17
Pfam IPR007123 EMBL-EBI Gelsolin region 4.6E-13
Pfam IPR006900 EMBL-EBI Sec23/Sec24 helical domain 2.0E-38
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 9.3E-110
Sequence
Target Sequence 
>C. ELEGANS:174397_AT
aaaattccgttctttcttcaatgtgctcgagttgaacggatatgggtttatcaattgatt
ttgtgttttttctttctagttgtgattattctccccgtctcttgaaaatcctctaaatat
ttcaaccatttttggccctgcctcaccatacattttatttgtcgcccgtcttccaaaatt
cttccaaaaatcgataaagtgataaataccaaagtgtatttctaattattattattatca
tttttccttcccctcaaatttcctgttcaatcatccagccgacccccgttaggattttaa
tgttacttttttcttggtttttcaaaatagcaatatttattacgattttttgttgctttt
tgcacttttgtagcaaaaactcatgtgaacagttttattatcaagttttttttccaagga
tctatggtttttgagttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTCCGTTCTTTCTTCAATGTG 39 135 29 Antisense
GTTCTTTCTTCAATGTGCTCGAGTT 630 443 37 Antisense
GTGCTCGAGTTGAACGGATATGGGT 370 477 51 Antisense
TGTTTTTTCTTTCTAGTTGTGATTA 489 559 92 Antisense
TTCTAGTTGTGATTATTCTCCCCGT 9 691 102 Antisense
CTGCCTCACCATACATTTTATTTGT 135 237 166 Antisense
CCATACATTTTATTTGTCGCCCGTC 340 269 174 Antisense
CCCTCAAATTTCCTGTTCAATCATC 604 259 279 Antisense
AATTTCCTGTTCAATCATCCAGCCG 229 175 285 Antisense
ACTCATGTGAACAGTTTTATTATCA 377 101 407 Antisense
AAGGATCTATGGTTTTTGAGTTGAA 277 161 444 Antisense
Sequence Source Affymetrix Proprietary Database