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[174396_at]

Description CEK008C7R_rc /REP_DB=TREMBL Accession /GB=D28039 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 05      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 50      6grp_total > 05      4grp_total > 22      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 629.5
(3)
P 		532.7
(-3)
P 		540.9
(-2.5)
P 		607.4
(1.6)
P 		97
B 616.6
(0.6)
P 		561.8
(-1.5)
P 		521.9
(-3)
P 		680.3
(3)
P 		158
C 553.7
(1.2)
P 		574.7
(3)
P 		544.6
(0.4)
P 		505.7
(-3)
P 		69
avr 599.9
(3) 		556.4
(-1.1) 		535.8
(-3) 		597.8
(2.8) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 635
1 2 3 4 5 6 range
A 951.7
(3)
P 		648
(0)
P 		360.5
(-2.8)
P 		439
(-2)
P 		615.1
(-0.3)
P 		338.9
(-3)
P 		613
B 766
(3)
P 		512.5
(-0.7)
P 		386.7
(-2.6)
P 		632.3
(1)
P 		465.8
(-1.4)
P 		356.2
(-3)
P 		410
C 604.7
(1.9)
P 		668.3
(3)
P 		568.3
(1.3)
P 		316.8
(-3)
P 		455.3
(-0.6)
P 		377.4
(-2)
P 		352
avr 774.1
(3) 		609.6
(0.6) 		438.5
(-1.8) 		462.7
(-1.5) 		512.1
(-0.8) 		357.5
(-3) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 229.2
(3)
P 		115.6
(-1.9)
P 		141.4
(-0.8)
P 		88.9
(-3)
P 		140
B 196.6
(3)
P 		138.7
(-1.6)
P 		120.9
(-3)
P 		145
(-1.1)
P 		76
C 183.3
(2.6)
P 		165.2
(1.6)
P 		189.8
(3)
P 		85.3
(-3)
P 		105
avr 203
(3) 		139.8
(-0.9) 		150.7
(-0.2) 		106.4
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 175.4
(0.8)
P 		230.5
(3)
P 		78.5
(-3)
P 		111.4
(-1.7)
P 		185.6
(1.2)
P 		82.5
(-2.8)
P 		152
B 266.5
(3)
P 		170.6
(-0.3)
P 		93.9
(-3)
P 		167.5
(-0.4)
P 		189.3
(0.3)
P 		132.8
(-1.6)
P 		173
C 224.1
(3)
P 		203.9
(2.2)
P 		144.6
(0)
P 		63.7
(-3)
P 		147.3
(0.1)
P 		126.3
(-0.7)
P 		160
avr 222
(3) 		201.7
(2) 		105.7
(-3) 		114.2
(-2.6) 		174.1
(0.5) 		113.9
(-2.6) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21427
Sequence Type Exemplar sequence
Representative Public ID CEK008C7R NCBI
Target Description CEK008C7R_rc /REP_DB=TREMBL Accession /GB=D28039 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068785 NCBI Caenorhabditis elegans B0496.3b (B0496.3) mRNA, complete cds. 11/11 None
B0496.3b ENSEMBL cdna:known chromosome:CEL140:IV:7431332:7444632:1 gene:B0496.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177514 3 1 NM_068785 174396_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7444250-7444623(+) 99.2 99.2
Public Domain and Genome References
Ensembl B0496.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05598 Hypothetical protein B0496.3b [Caenorhabditis elegans] ref|NP_501186.3| B0496.3b [Caenorhabditis elegans] 0.0
blast AAU05597 Hypothetical protein B0496.3a [Caenorhabditis elegans] ref|NP_501185.3| B0496.3a [Caenorhabditis elegans] 0.0
blast T29253 hypothetical protein B0496.3 - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 4.0E-77
hanks 1.9.5 AGC group; AGC Other; DdK2 3.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-92
Sequence
Target Sequence 
>C. ELEGANS:174396_AT
ttttttcagttttgccatctttcttttccttctctttttgtaaactttaaaaataatttg
aaaactcttttttttgtaacttaaaaattcttgctcaccactttctacagttcatttttt
tgtaaatatcgtatggagaaactatcgggtgtccgatattattctttttttattaaaaat
gtcatcttctctctcacccaaaaacctagtcaacaatgactctttacatgtcgtcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTCAGTTTTGCCATCTTTCTT 367 675 119 Antisense
TGTAACTTAAAAATTCTTGCTCACC 279 559 193 Antisense
TAAAAATTCTTGCTCACCACTTTCT 536 639 200 Antisense
CTCACCACTTTCTACAGTTCATTTT 132 229 212 Antisense
CACTTTCTACAGTTCATTTTTTTGT 595 197 217 Antisense
GTATGGAGAAACTATCGGGTGTCCG 501 455 249 Antisense
TCGGGTGTCCGATATTATTCTTTTT 2 607 263 Antisense
TAAAAATGTCATCTTCTCTCTCACC 256 641 292 Antisense
TCTCTCACCCAAAAACCTAGTCAAC 163 613 308 Antisense
AAAACCTAGTCAACAATGACTCTTT 623 127 319 Antisense
ATGACTCTTTACATGTCGTCTTCAT 508 45 334 Antisense
Sequence Source Affymetrix Proprietary Database