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[174395_at]

Description C54480_rc /REP_DB=TREMBL Accession /GB=C54480 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk359c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 28      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 189.5
(3)
P 		127.3
(-0.5)
P 		83.5
(-3)
P 		111.8
(-1.4)
P 		106
B 202.8
(2.6)
P 		191.2
(1.6)
P 		136.6
(-3)
P 		207.4
(3)
P 		71
C 268.3
(3)
P 		151.1
(-2.4)
M 		139.1
(-3)
P 		197.4
(-0.3)
P 		129
avr 220.2
(3) 		156.5
(-0.8) 		119.7
(-3) 		172.2
(0.1) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 220.2
(3)
P 		138.3
(-1.7)
P 		139.7
(-1.6)
P 		115.5
(-3)
P 		144.4
(-1.3)
P 		118.6
(-2.8)
P 		105
B 263
(3)
P 		233.8
(1.9)
P 		110.2
(-2.5)
P 		97.1
(-3)
P 		115.3
(-2.3)
P 		249.3
(2.5)
P 		166
C 258.7
(3)
P 		156.5
(-1.7)
P 		137.6
(-2.5)
P 		127.7
(-3)
P 		196.8
(0.2)
P 		181.9
(-0.5)
P 		131
avr 247.3
(3) 		176.2
(-0.2) 		129.2
(-2.3) 		113.4
(-3) 		152.2
(-1.3) 		183.3
(0.1) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 69
(3)
P 		27.6
(-1.7)
P 		21.8
(-2.4)
P 		16.4
(-3)
P 		53
B 64.7
(3)
P 		47.2
(-0.2)
P 		31.6
(-3)
P 		44.2
(-0.7)
P 		33
C 88.8
(3)
P 		43.4
(-1.9)
M 		48.5
(-1.4)
P 		33.3
(-3)
P 		56
avr 74.2
(3) 		39.4
(-1.9) 		34
(-2.6) 		31.3
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 40.6
(0.5)
P 		49.2
(3)
P 		30.4
(-2.6)
P 		29.3
(-2.9)
P 		43.6
(1.3)
P 		28.9
(-3)
P 		20
B 91.5
(2.9)
P 		77.8
(1.6)
P 		26.8
(-2.9)
P 		25.7
(-3)
P 		46.8
(-1.1)
P 		93
(3)
P 		67
C 95.9
(3)
P 		47.8
(-1.1)
P 		35
(-2.2)
P 		25.7
(-3)
P 		63.7
(0.2)
P 		60.9
(0)
P 		70
avr 76
(3) 		58.3
(0.8) 		30.7
(-2.5) 		26.9
(-3) 		51.4
(-0) 		60.9
(1.2) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22237
Sequence Type Exemplar sequence
Representative Public ID C54480 NCBI
Target Description C54480_rc /REP_DB=TREMBL Accession /GB=C54480 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk359c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171732 NCBI Caenorhabditis elegans R03G5.7 (R03G5.7) mRNA, complete cds. 11/11 None
R03G5.7 ENSEMBL cdna:known chromosome:CEL140:X:7805622:7806749:-1 gene:R03G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7805639-7805918(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03G5.7
Entrez Gene 181042 Entrez gene
SwissProt Q8MQ01 EMBL-EBI
WormBase CE31212 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69099 Hypothetical protein R03G5.7 [Caenorhabditis elegans] ref|NP_741847.1| R03G5.7 [Caenorhabditis elegans] 2.0E-41
blast CAE70284 Hypothetical protein CBG16801 [Caenorhabditis briggsae] 2.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741847.1 3 2-17,32-51,58-77
R03G5.7 3 2-17,32-51,58-77
Sequence
Target Sequence 
>C. ELEGANS:174395_AT
cccaaatgcttttttgttgtttatgtaaaatttcaggtttcccacttgtttcactcagat
tcttcgtaagactgtgtggataacacatacgtgcctgactcacacaattgaccacgtgtt
cttttgaactagatactcttctttcaaaaaagctttctcttaacgccccctctcactctg
aatcatcttagaattttgatctctttcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAAATGCTTTTTTGTTGTTTATG 366 257 28 Antisense
TGTAAAATTTCAGGTTTCCCACTTG 299 545 51 Antisense
CACTTGTTTCACTCAGATTCTTCGT 357 197 70 Antisense
TTCTTCGTAAGACTGTGTGGATAAC 148 687 87 Antisense
GTGGATAACACATACGTGCCTGACT 444 489 103 Antisense
CATACGTGCCTGACTCACACAATTG 352 213 113 Antisense
GACTCACACAATTGACCACGTGTTC 178 373 124 Antisense
AATTGACCACGTGTTCTTTTGAACT 249 175 133 Antisense
CTTTTGAACTAGATACTCTTCTTTC 675 219 148 Antisense
CTCTTCTTTCAAAAAAGCTTTCTCT 668 227 163 Antisense
CTTAGAATTTTGATCTCTTTCCCAA 49 223 214 Antisense
Sequence Source Affymetrix Proprietary Database