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[174394_at]

Description C56157_rc /REP_DB=TREMBL Accession /GB=C56157 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 48      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 158.2
(-2.4)
P 		185.2
(1.1)
P 		200.3
(3)
P 		153.4
(-3)
P 		47
B 107.7
(-3)
P 		323.6
(3)
P 		324.4
(3)
P 		165.7
(-1.4)
P 		217
C 187.4
(-1.2)
P 		146.1
(-3)
P 		286.8
(3)
P 		182.8
(-1.4)
P 		141
avr 151.1
(-3) 		218.3
(0.4) 		270.5
(3) 		167.3
(-2.2) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1426
1 2 3 4 5 6 range
A 168.2
(-3)
P 		179.5
(-3)
P 		223.7
(-2.8)
P 		322.2
(-2.3)
P 		1387.5
(2.4)
P 		1529.7
(3)
P 		1362
B 177.7
(-3)
P 		243.8
(-2.7)
P 		344
(-2.2)
P 		530.1
(-1.4)
P 		708
(-0.6)
P 		1479
(3)
P 		1301
C 103.9
(-3)
P 		253.6
(-2.1)
P 		266.8
(-2)
P 		481.8
(-0.7)
P 		704
(0.7)
P 		1082.7
(3)
P 		979
avr 149.9
(-3) 		225.6
(-2.6) 		278.2
(-2.4) 		444.7
(-1.5) 		933.2
(0.9) 		1363.8
(3) 		1214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 57.6
(3)
P 		40.2
(0)
P 		52.4
(2.1)
P 		22.5
(-3)
P 		35
B 34.3
(-3)
P 		79.9
(3)
P 		75.2
(2.4)
P 		35.3
(-2.9)
P 		46
C 62
(-0.3)
P 		42
(-2)
P 		100
(3)
P 		30.8
(-3)
P 		69
avr 51.3
(-0.2) 		54
(0.2) 		75.9
(3) 		29.5
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 31
(-3)
P 		63.8
(-2.5)
P 		48.7
(-2.7)
P 		81.7
(-2.2)
P 		418.7
(3)
P 		372.4
(2.3)
P 		388
B 61.8
(-3)
P 		81.2
(-2.8)
P 		83.5
(-2.7)
P 		140.4
(-2)
P 		287.7
(-0.2)
P 		551.5
(3)
P 		490
C 38.5
(-3)
P 		77.4
(-2.3)
P 		67.9
(-2.5)
P 		96.9
(-1.9)
P 		227.8
(0.5)
P 		362.4
(3)
P 		324
avr 43.8
(-3) 		74.1
(-2.5) 		66.7
(-2.6) 		106.3
(-2) 		311.4
(1.2) 		428.8
(3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20588
Sequence Type Exemplar sequence
Representative Public ID C56157 NCBI
Target Description C56157_rc /REP_DB=TREMBL Accession /GB=C56157 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56157
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56157 C56157_rc /REP_DB=TREMBL Accession /GB=C56157 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233f7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10574379-10574660(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174394_AT
gattccttcccacttgtgtaattttacaatgttacaattgcaataagcttacccatactc
acatagtttcccagtgtattaatattgcccattcttgttatttcatacttatcctgttat
gcacatcccccttctccttgttaaatatttgtgtagcaccctttgtgtagcaatttgtca
tcgcaatttcttttctctttgaaattacgatgacaagtttgctctgtggcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTTCCCACTTGTGTAATTTT 458 433 14 Antisense
GCAATAAGCTTACCCATACTCACAT 319 323 53 Antisense
ACCCATACTCACATAGTTTCCCAGT 61 91 64 Antisense
GTTTCCCAGTGTATTAATATTGCCC 378 447 79 Antisense
ATTGCCCATTCTTGTTATTTCATAC 430 7 97 Antisense
ATACTTATCCTGTTATGCACATCCC 134 25 118 Antisense
CCCTTCTCCTTGTTAAATATTTGTG 615 259 142 Antisense
TTTGTGTAGCACCCTTTGTGTAGCA 172 663 161 Antisense
TTGTGTAGCAATTTGTCATCGCAAT 189 707 176 Antisense
TCATCGCAATTTCTTTTCTCTTTGA 599 621 191 Antisense
GATGACAAGTTTGCTCTGTGGCCTT 638 411 222 Antisense
Sequence Source Affymetrix Proprietary Database