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[174393_at]

Description C34563_rc /REP_DB=TREMBL Accession /GB=C34563 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 80      4grp_highest_8_8 > 06      4grp_high_8_8 > 21      6grp_highest_nonorm > 46      6grp_total > 92      4grp_total > 18      6grp_highest_sub > De      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3607
1 2 3 4 range
A 2319.8
(-3)
P 		2974.2
(-1.2)
P 		2738.4
(-1.9)
P 		4562
(3)
P 		2242
B 1939.4
(-3)
P 		3951.9
(0.3)
P 		2779.8
(-1.6)
P 		5545.9
(3)
P 		3607
C 2313.1
(-3)
P 		3566.6
(0.7)
P 		2675.7
(-1.9)
P 		4366.7
(3)
P 		2054
avr 2190.8
(-3) 		3497.6
(-0) 		2731.3
(-1.8) 		4824.9
(3) 		2634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1490
1 2 3 4 5 6 range
A 2163.8
(-2.2)
P 		2917.1
(1.3)
P 		2613.9
(-0.1)
P 		2522.8
(-0.5)
P 		3267.4
(3)
P 		1996
(-3)
P 		1271
B 3254
(3)
P 		2679.2
(0.5)
P 		2965.7
(1.7)
P 		2651.8
(0.4)
P 		3258.5
(3)
P 		1853.2
(-3)
P 		1405
C 3173.5
(2.8)
P 		2604.9
(0.4)
P 		3230.6
(3)
P 		2825.6
(1.3)
P 		2945.1
(1.8)
P 		1777.2
(-3)
P 		1453
avr 2863.8
(1.6) 		2733.7
(1) 		2936.7
(2) 		2666.7
(0.7) 		3157
(3) 		1875.5
(-3) 		1282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 563
1 2 3 4 range
A 844.6
(3)
P 		645.6
(-3)
P 		715.9
(-0.9)
P 		667.8
(-2.3)
P 		199
B 618.5
(-3)
P 		976
(0.8)
P 		644.2
(-2.7)
P 		1181.8
(3)
P 		563
C 765.7
(-2.4)
P 		1025.4
(3)
P 		932.6
(1.1)
P 		736.3
(-3)
P 		289
avr 742.9
(-3) 		882.3
(3) 		764.2
(-2.1) 		862
(2.1) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 925
1 2 3 4 5 6 range
A 398.9
(-3)
P 		1037.5
(3)
P 		569.3
(-1.4)
P 		639.8
(-0.7)
P 		986
(2.5)
P 		486
(-2.2)
P 		639
B 1132.2
(1.2)
P 		891.8
(-1.1)
P 		720.2
(-2.7)
P 		702.4
(-2.9)
P 		1323.9
(3)
P 		691.1
(-3)
P 		633
C 1176.3
(3)
P 		794.8
(-0.8)
P 		822.2
(-0.5)
P 		568.2
(-3)
P 		953
(0.8)
P 		594.9
(-2.7)
P 		608
avr 902.5
(0.8) 		908
(0.8) 		703.9
(-1.6) 		636.8
(-2.4) 		1087.6
(3) 		590.7
(-3) 		497
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22369
Sequence Type Exemplar sequence
Representative Public ID C34563 NCBI
Target Description C34563_rc /REP_DB=TREMBL Accession /GB=C34563 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H40L08.2 ENSEMBL cdna:pseudogene chromosome:CEL140:X:15076794:15077523:-1 gene:H40L08.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002253 7/11 Cross Hyb Matching Probes None
SNAP00000002250 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15076739-15077081(-) 100.0 100.0
Public Domain and Genome References
Ensembl H40L08.2
Sequence
Target Sequence 
>C. ELEGANS:174393_AT
ccaccccgactgattatgccggagatgaccgcaatgactgtacaaagtctttcatcgccg
cacagtgcgccagtcacgccacctgtgagcactccattgacttcaccggtctctaacata
gcagtagttacgcttaaaccgatttgcaggccaattattggtatcttccgcaaagaaagt
ttcatgtcgaatgtcccatttatctttcctaatcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCCCGACTGATTATGCCGGAGA 134 275 17 Antisense
TATGCCGGAGATGACCGCAATGACT 568 657 31 Antisense
TGTACAAAGTCTTTCATCGCCGCAC 501 559 55 Antisense
CATTGACTTCACCGGTCTCTAACAT 579 217 111 Antisense
CACCGGTCTCTAACATAGCAGTAGT 402 201 120 Antisense
GCAGTAGTTACGCTTAAACCGATTT 198 61 137 Antisense
AAACCGATTTGCAGGCCAATTATTG 383 125 152 Antisense
GCCAATTATTGGTATCTTCCGCAAA 628 277 166 Antisense
GAAAGTTTCATGTCGAATGTCCCAT 231 359 191 Antisense
GAATGTCCCATTTATCTTTCCTAAT 665 329 205 Antisense
GTCCCATTTATCTTTCCTAATCAGA 456 475 209 Antisense
Sequence Source Affymetrix Proprietary Database