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[174392_at]

Description C54668_rc /REP_DB=TREMBL Accession /GB=C54668 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk397c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 95      6grp_total > 79      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 719.3
(3)
P 		496.3
(-2.2)
P 		462.1
(-3)
P 		484.7
(-2.5)
P 		257
B 656.2
(2.4)
P 		506.4
(-1.5)
P 		446.6
(-3)
P 		680.4
(3)
P 		234
C 591.8
(2.9)
P 		380.7
(-2.9)
P 		377
(-3)
P 		596.3
(3)
P 		219
avr 655.8
(3) 		461.1
(-2.1) 		428.6
(-3) 		587.1
(1.2) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 818
1 2 3 4 5 6 range
A 671.4
(-1.1)
P 		684.5
(-1)
P 		406.3
(-3)
P 		592.8
(-1.6)
P 		906.3
(0.7)
P 		1224.7
(3)
P 		818
B 554.1
(-2.2)
P 		790.2
(0.6)
P 		488.6
(-3)
P 		647.5
(-1.1)
P 		655.3
(-1)
P 		997.4
(3)
P 		509
C 720.2
(-0.6)
P 		651.9
(-1.6)
P 		641.2
(-1.7)
P 		547.3
(-3)
P 		906.7
(1.9)
P 		983.2
(3)
P 		436
avr 648.6
(-1.5) 		708.9
(-0.9) 		512
(-3) 		595.9
(-2.1) 		822.8
(0.4) 		1068.4
(3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 261.9
(3)
P 		107.7
(-1.8)
P 		120.8
(-1.4)
P 		70.9
(-3)
P 		191
B 209.3
(3)
P 		125.1
(-1.8)
P 		103.5
(-3)
P 		145
(-0.6)
P 		106
C 195.9
(3)
P 		109.5
(-2.4)
P 		131.4
(-1.1)
P 		100.5
(-3)
P 		95
avr 222.4
(3) 		114.1
(-2.6) 		118.6
(-2.3) 		105.5
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 123.8
(-2)
P 		243.4
(1.4)
P 		88.5
(-3)
P 		150.4
(-1.2)
P 		273.5
(2.3)
P 		298.2
(3)
P 		210
B 192.8
(-1.2)
P 		263
(0.4)
P 		118.7
(-3)
P 		171.5
(-1.7)
P 		266.2
(0.5)
P 		371.9
(3)
P 		253
C 267
(1.3)
P 		198.9
(-0.6)
P 		163.2
(-1.5)
P 		110.1
(-3)
P 		293.4
(2)
P 		329.1
(3)
P 		219
avr 194.5
(-1) 		235.1
(0.2) 		123.5
(-3) 		144
(-2.4) 		277.7
(1.4) 		333.1
(3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21204
Sequence Type Exemplar sequence
Representative Public ID C54668 NCBI
Target Description C54668_rc /REP_DB=TREMBL Accession /GB=C54668 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk397c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065508 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-45) (pqn-45) mRNA, complete cds. 11/11 None
F56F3.1 ENSEMBL cdna:known chromosome:CEL140:III:4471376:4475109:-1 gene:F56F3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4471435-4471738(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-45
Ensembl F56F3.1
Entrez Gene 175583 Entrez gene
SwissProt Q20898 EMBL-EBI
WormBase CE17911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83608 Hypothetical protein F56F3.1 [Caenorhabditis elegans] ref|NP_497909.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-45) [Caenorhabditis elegans] 0.0
blast CAE71198 Hypothetical protein CBG18057 [Caenorhabditis briggsae] 0.0
blast AAH90823 Hypothetical protein LOC541411 [Danio rerio] ref|NP_001013556.1| hypothetical protein LOC541411 [Danio rerio] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:174392_AT
gaatttcttgcatcccgtcggatgcgtagaggatctctcgaaaatgcgaaaagttttata
agggtacactcattttcaattccatctcccactcaattttacatcagattgtccctaaaa
cgtttttgtacttgtacaagtttggtgtccacattttgttggatctcgtccactcttgtt
ctcattatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCTTGCATCCCGTCGGATGC 405 323 18 Antisense
CGTCGGATGCGTAGAGGATCTCTCG 55 245 33 Antisense
GTAGAGGATCTCTCGAAAATGCGAA 453 455 43 Antisense
AGGGTACACTCATTTTCAATTCCAT 113 59 78 Antisense
CATCTCCCACTCAATTTTACATCAG 298 213 100 Antisense
CTCCCACTCAATTTTACATCAGATT 58 235 103 Antisense
ACATCAGATTGTCCCTAAAACGTTT 10 107 118 Antisense
GTACAAGTTTGGTGTCCACATTTTG 494 459 151 Antisense
GGTGTCCACATTTTGTTGGATCTCG 69 501 161 Antisense
ATTTTGTTGGATCTCGTCCACTCTT 131 15 170 Antisense
TCCACTCTTGTTCTCATTATTTTTT 359 589 186 Antisense
Sequence Source Affymetrix Proprietary Database