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[174391_at]

Description C54271_rc /REP_DB=TREMBL Accession /GB=C54271 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk355d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 406.2
(3)
P 		175.3
(-1.6)
P 		107.7
(-3)
P 		265.9
(0.2)
P 		299
B 457.7
(3)
P 		197.1
(-1.1)
P 		75.4
(-3)
P 		179
(-1.4)
P 		382
C 469.3
(3)
P 		230.1
(-1.3)
P 		135.9
(-3)
P 		354
(0.9)
P 		333
avr 444.4
(3) 		200.8
(-1.3) 		106.3
(-3) 		266.3
(-0.2) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 333.9
(3)
P 		289.5
(2)
P 		107.7
(-2.2)
P 		136.3
(-1.6)
P 		136.6
(-1.6)
P 		75.1
(-3)
P 		259
B 306.9
(3)
P 		263
(1.7)
P 		98.5
(-3)
P 		172.6
(-0.9)
P 		126.6
(-2.2)
P 		109.3
(-2.7)
P 		208
C 332.5
(3)
P 		168.5
(-1.5)
P 		162.2
(-1.6)
P 		156.1
(-1.8)
P 		112
(-3)
P 		113
(-3)
P 		221
avr 324.4
(3) 		240.3
(0.8) 		122.8
(-2.4) 		155
(-1.5) 		125.1
(-2.3) 		99.1
(-3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 147.9
(3)
P 		38
(-2.5)
P 		28.2
(-3)
P 		38.9
(-2.5)
P 		120
B 146
(3)
P 		48.7
(-1.5)
P 		17.5
(-3)
P 		38.1
(-2)
P 		129
C 155.4
(3)
P 		66.2
(-2)
P 		47.4
(-3)
P 		59.7
(-2.3)
P 		108
avr 149.8
(3) 		51
(-2) 		31
(-3) 		45.6
(-2.3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 61.5
(0.1)
P 		103
(3)
P 		23.5
(-2.6)
P 		34.6
(-1.8)
P 		41.2
(-1.4)
P 		18.3
(-3)
P 		85
B 106.8
(3)
P 		87.5
(1.6)
P 		23.9
(-3)
P 		45.7
(-1.4)
P 		51.4
(-1)
P 		40.7
(-1.8)
P 		83
C 123.2
(3)
P 		51.4
(-1.7)
P 		41.3
(-2.4)
P 		31.4
(-3)
P 		36.2
(-2.7)
P 		37.8
(-2.6)
P 		92
avr 97.2
(3) 		80.6
(1.5) 		29.6
(-3) 		37.2
(-2.3) 		42.9
(-1.8) 		32.3
(-2.8) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21467
Sequence Type Exemplar sequence
Representative Public ID C54271 NCBI
Target Description C54271_rc /REP_DB=TREMBL Accession /GB=C54271 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk355d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171370 NCBI Caenorhabditis elegans R13H7.2a (R13H7.2) mRNA, complete cds. 11/11 None
R13H7.2a ENSEMBL cdna:known chromosome:CEL140:IV:6846078:6859335:-1 gene:R13H7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177450 3 1 NM_171370 174391_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6846128-6846408(-) 100.0 100.0
Public Domain and Genome References
Ensembl R13H7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741433 R13H7.2a [Caenorhabditis elegans] 0.0
blast ABA03113 Hypothetical protein R13H7.2a [Caenorhabditis elegans] 0.0
blast NP_001023345 R13H7.2c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741433.2 6 82-104,113-135,155-177,198-220,262-284,321-343
R13H7.2a 6 82-104,113-135,155-177,198-220,262-284,321-343
Sequence
Target Sequence 
>C. ELEGANS:174391_AT
gaattgtggaatgcgtgttttattaaggattacatcgaaaatctcattgtcaattcataa
tcgattcttattcataatataatattcttccatgcatctcccatttcaatttgatctcat
ctcctttcagagcattttcaaataattctaaccttctcaaaaccatatgtttcctgtact
cccagatgtccaaaaatcttttttttttgtctgtttccgtgtttccacaggtttctcaat
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTGGAATGCGTGTTTTATTA 357 323 20 Antisense
ATCGAAAATCTCATTGTCAATTCAT 227 37 53 Antisense
GTCAATTCATAATCGATTCTTATTC 231 463 68 Antisense
ATATAATATTCTTCCATGCATCTCC 63 21 96 Antisense
ATCTCCCATTTCAATTTGATCTCAT 343 33 115 Antisense
GATCTCATCTCCTTTCAGAGCATTT 561 419 132 Antisense
TTCTAACCTTCTCAAAACCATATGT 655 689 165 Antisense
CAAAACCATATGTTTCCTGTACTCC 304 191 177 Antisense
TTTCCTGTACTCCCAGATGTCCAAA 442 669 189 Antisense
TCTGTTTCCGTGTTTCCACAGGTTT 528 607 229 Antisense
GTGTTTCCACAGGTTTCTCAATTGT 546 483 238 Antisense
Sequence Source Affymetrix Proprietary Database