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[174390_s_at]

Description C30984_rc /REP_DB=TREMBL Accession /GB=C30984 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk266h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 83      6grp_total > 49      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 553.1
(3)
P 		423.2
(-3)
P 		433.9
(-2.5)
P 		552.8
(3)
P 		130
B 664.4
(3)
P 		509.6
(-0.9)
P 		427.5
(-3)
P 		561.9
(0.4)
P 		237
C 558
(3)
P 		388.9
(-3)
P 		415.3
(-2.1)
P 		548.9
(2.7)
P 		169
avr 591.8
(3) 		440.6
(-2.5) 		425.6
(-3) 		554.5
(1.7) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 505.9
(0.6)
P 		581.8
(2.3)
P 		348.7
(-3)
P 		429.4
(-1.2)
P 		526.5
(1)
P 		614.1
(3)
P 		265
B 640.6
(3)
P 		501.7
(0.2)
P 		340.2
(-3)
P 		479.7
(-0.2)
P 		572.9
(1.6)
P 		603.3
(2.3)
P 		300
C 534.6
(1)
P 		462.8
(-0.1)
P 		383.5
(-1.3)
P 		275.8
(-3)
P 		529.1
(0.9)
P 		661.7
(3)
P 		386
avr 560.4
(1.5) 		515.4
(0.5) 		357.5
(-3) 		395
(-2.2) 		542.8
(1.1) 		626.4
(3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 201.4
(3)
P 		91.9
(-2.5)
P 		113.4
(-1.4)
P 		80.9
(-3)
P 		121
B 211.9
(3)
P 		125.9
(-1.6)
P 		99.1
(-3)
P 		119.7
(-1.9)
P 		113
C 184.7
(3)
P 		111.8
(-1.7)
P 		144.7
(0.4)
P 		92.5
(-3)
P 		92
avr 199.3
(3) 		109.9
(-2.3) 		119.1
(-1.7) 		97.7
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 93.3
(-2.2)
P 		206.9
(3)
P 		75.9
(-3)
P 		108.9
(-1.5)
P 		158.9
(0.8)
P 		149.5
(0.4)
P 		131
B 222.9
(2.6)
P 		167
(0.4)
P 		82.6
(-3)
P 		127
(-1.2)
P 		232.8
(3)
P 		225
(2.7)
P 		150
C 198.2
(2.2)
P 		141.2
(0.1)
P 		97.6
(-1.5)
P 		55.5
(-3)
P 		171.2
(1.2)
P 		221.5
(3)
P 		166
avr 171.5
(1.6) 		171.7
(1.6) 		85.4
(-3) 		97.1
(-2.4) 		187.6
(2.4) 		198.7
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174390_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20170
Sequence Type Exemplar sequence
Representative Public ID C30984 NCBI
Target Description C30984_rc /REP_DB=TREMBL Accession /GB=C30984 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk266h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060992 NCBI Caenorhabditis elegans W09C5.7 (W09C5.7) mRNA, complete cds. 11/11 A 
SNAP00000012969 ENSEMBL cdna:SNAP chromosome:CEL140:I:13662353:13666257:1 11/11 None
GENEFINDER00000013004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13662353:13666257:1 11/11 None
W09C5.7 ENSEMBL cdna:known chromosome:CEL140:I:13662147:13666271:1 gene:W09C5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13665848-13666128(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C5.7
Entrez Gene 173236 Entrez gene
SwissProt Q9U330 EMBL-EBI
WormBase CE20170 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.446.1.A1_AT similar to inositol polyphosphate-5-phosphatase F isoform 1 cfa
CANINE_2:CFAAFFX.18991.1.S1_S_AT similar to inositol polyphosphate-5-phosphatase F isoform 1 cfa
DROSOPHILA_2:1636454_AT dm
DROSGENOME1:150315_AT dm
CHICKEN:GGA.13374.1.S1_AT inositol polyphosphate-5-phosphatase F gga
CHICKEN:GGA.6172.1.S1_AT inositol polyphosphate-5-phosphatase F gga
CHICKEN:GGAAFFX.22928.1.S1_AT inositol polyphosphate-5-phosphatase F gga
HG-U133A:203607_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:203607_AT inositol polyphosphate-5-phosphatase F hs
HG-U133A_2:203607_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBA:H15203_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBB:RC_N73551_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBC:RC_AA430333_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBD:RC_AA491243_AT inositol polyphosphate-5-phosphatase F hs
U133_X3P:G7662413_3P_AT inositol polyphosphate-5-phosphatase F hs
U133_X3P:HS.52463.1.S1_3P_A_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:230362_AT inositol polyphosphate-5-phosphatase F hs
HG-U133B:230362_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:230363_S_AT inositol polyphosphate-5-phosphatase F hs
HG-U133B:230363_S_AT inositol polyphosphate-5-phosphatase F hs
HG-U95AV2:36089_AT inositol polyphosphate-5-phosphatase F hs
HG-U95B:47043_AT inositol polyphosphate-5-phosphatase F hs
HG-U95C:50781_AT inositol polyphosphate-5-phosphatase F hs
HG-U95D:89312_AT Inositol polyphosphate-5-phosphatase F hs
MOUSE430_2:1442100_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1442100_AT inositol polyphosphate-5-phosphatase F mm
MG-U74BV2:165339_F_AT inositol polyphosphate-5-phosphatase F mm
MG-U74BV2:162739_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:167769_F_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1433542_AT inositol polyphosphate-5-phosphatase F mm
MOUSE430_2:1433542_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1447757_X_AT inositol polyphosphate-5-phosphatase F mm
MOUSE430_2:1447757_X_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:137065_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:168450_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOE430B:1439126_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOUSE430_2:1439126_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOE430B:1445884_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOUSE430_2:1445884_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MU19KSUBB:TC29111_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MU19KSUBC:TC37618_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
RG-U34C:H34543_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230B:1391312_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1391312_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230A:1389176_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1389176_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230B:1398696_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1398696_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RG-U34B:RC_AA899228_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RG-U34C:RC_AI235352_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB63333 Hypothetical protein W09C5.7 [Caenorhabditis elegans] ref|NP_493393.1| W09C5.7 [Caenorhabditis elegans] 0.0
blast CAE72583 Hypothetical protein CBG19771 [Caenorhabditis briggsae] 0.0
blast XP_392092 PREDICTED: similar to GA20719-PA [Apis mellifera] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.5E-54
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.7E-52
Sequence
Target Sequence 
>C. ELEGANS:174390_S_AT
tccctcaaatgtcggttcatagaaaatcgatggctgcgatgggtgcactgttcgggaaga
tcaagcgagttgggaagccatccagtctatcgaaaagtgcttccacaatttcaactgctc
aacttccagaaaccgatggaaacgaatcggacgcatcgcaaaaatcggatcacttaatga
cgaaaatcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCAAATGTCGGTTCATAGAAA 539 595 63 Antisense
CGATGGCTGCGATGGGTGCACTGTT 679 249 90 Antisense
GGTGCACTGTTCGGGAAGATCAAGC 530 499 104 Antisense
AGCGAGTTGGGAAGCCATCCAGTCT 47 77 126 Antisense
GGAAGCCATCCAGTCTATCGAAAAG 179 531 135 Antisense
AGTCTATCGAAAAGTGCTTCCACAA 386 61 146 Antisense
GCTTCCACAATTTCAACTGCTCAAC 231 307 161 Antisense
AACTGCTCAACTTCCAGAAACCGAT 36 143 175 Antisense
GGAAACGAATCGGACGCATCGCAAA 580 527 200 Antisense
GACGCATCGCAAAAATCGGATCACT 84 381 212 Antisense
GATCACTTAATGACGAAAATCCTGA 392 415 230 Antisense
Sequence Source Affymetrix Proprietary Database