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[174389_s_at]

Description C59652_rc /REP_DB=TREMBL Accession /GB=C59652 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      6grp_highest_nonorm > 71      6grp_total > 02      4grp_total > 49      6grp_highest_sub > De      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 809
1 2 3 4 range
A 8.3
(-3)
A 		812.6
(3)
P 		597.9
(1.4)
P 		74.9
(-2.5)
A 		804
B 20.4
(-3)
A 		817.1
(3)
P 		665.4
(1.9)
P 		41.6
(-2.8)
A 		797
C 59.2
(-3)
A 		796.4
(3)
P 		718
(2.4)
P 		74.1
(-2.9)
A 		737
avr 29.3
(-3) 		808.7
(3) 		660.4
(1.9) 		63.5
(-2.7) 		779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 308.8
(-0.1)
P 		458.6
(3)
P 		289
(-0.5)
P 		334.6
(0.5)
P 		276.3
(-0.7)
P 		165.2
(-3)
P 		293
B 378.5
(1.2)
P 		471.2
(3)
P 		219.9
(-1.9)
P 		315.8
(-0)
P 		316.1
(-0)
P 		165.4
(-3)
P 		306
C 423
(3)
P 		399.9
(2.5)
P 		327.5
(1)
P 		319.8
(0.8)
P 		359.5
(1.6)
P 		142
(-3)
P 		281
avr 370.1
(1.5) 		443.2
(3) 		278.8
(-0.5) 		323.4
(0.5) 		317.3
(0.4) 		157.5
(-3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 3
(-3)
A 		176.4
(3)
P 		156.3
(2.3)
P 		11
(-2.7)
A 		173
B 6.5
(-3)
A 		201.8
(3)
P 		154.2
(1.5)
P 		8.9
(-2.9)
A 		195
C 19.6
(-2.8)
A 		229
(2.5)
P 		250.2
(3)
P 		12.5
(-3)
A 		238
avr 9.7
(-3) 		202.4
(3) 		186.9
(2.5) 		10.8
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 56.9
(-2.2)
P 		163.1
(3)
P 		62.9
(-1.9)
P 		84.9
(-0.8)
P 		83.4
(-0.9)
P 		40.2
(-3)
P 		123
B 131.7
(1.5)
P 		156.8
(3)
P 		53.4
(-3)
P 		83.6
(-1.2)
P 		128.4
(1.4)
P 		61.7
(-2.5)
P 		103
C 156.8
(3)
P 		122
(1.1)
P 		83.4
(-1)
P 		64.3
(-2.1)
P 		116.3
(0.8)
P 		47.5
(-3)
P 		109
avr 115.1
(1) 		147.3
(3) 		66.6
(-2) 		77.6
(-1.3) 		109.4
(0.7) 		49.8
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174389_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22452
Sequence Type Exemplar sequence
Representative Public ID C59652 NCBI
Target Description C59652_rc /REP_DB=TREMBL Accession /GB=C59652 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029580(9), NM_001029579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029580 NCBI Caenorhabditis elegans K02E10.4b (K02E10.4) mRNA, complete cds. 9/11 None
NM_001029579 NCBI Caenorhabditis elegans K02E10.4a (K02E10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017108 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2483256:2488209:1 11/11 None
K02E10.4b ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488260:1 gene:K02E10.4 9/11 None
K02E10.4a ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488209:1 gene:K02E10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017097 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2483485-2483866(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02E10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05564 Hypothetical protein K02E10.4b [Caenorhabditis elegans] ref|NP_001024751.1| K02E10.4b [Caenorhabditis elegans] 0.0
blast AAC47069 Hypothetical protein K02E10.4a [Caenorhabditis elegans] ref|NP_001024750.1| K02E10.4a [Caenorhabditis elegans] 0.0
blast T16520 hypothetical protein K02E10.4 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024751.1 2 29-46,66-88
NP_001024750.1 2 29-46,66-88
K02E10.4b 2 29-46,66-88
K02E10.4a 2 29-46,66-88
GENEFINDER00000017108 2 29-46,66-88
Sequence
Target Sequence 
>C. ELEGANS:174389_S_AT
tccaacctgcccaaatggccaactaccaaagttagattcatcgttaagacctctacaatg
tttgccaggcacttcacaacacttaatttgtggtgctaatcataactgtttctttaccgg
attgaattatatgtgctgcccgtcaaatgagccatccatagataatcaaccgagttgtcc
atacccaaagctaacagtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACCTGCCCAAATGGCCAACTA 263 587 56 Antisense
GTTAGATTCATCGTTAAGACCTCTA 576 443 86 Antisense
GACCTCTACAATGTTTGCCAGGCAC 292 383 103 Antisense
CCAGGCACTTCACAACACTTAATTT 57 273 120 Antisense
GTGGTGCTAATCATAACTGTTTCTT 150 489 145 Antisense
CATAACTGTTTCTTTACCGGATTGA 143 211 156 Antisense
GAATTATATGTGCTGCCCGTCAAAT 199 325 179 Antisense
GCCCGTCAAATGAGCCATCCATAGA 131 285 193 Antisense
GAGCCATCCATAGATAATCAACCGA 453 385 204 Antisense
AATCAACCGAGTTGTCCATACCCAA 652 169 219 Antisense
GTCCATACCCAAAGCTAACAGTTTT 315 477 232 Antisense
Sequence Source Affymetrix Proprietary Database