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[174388_at]

Description C53095_rc /REP_DB=TREMBL Accession /GB=C53095 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk288g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 54      6grp_total > 91      4grp_total > 56      6grp_highest_sub > 05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1005
1 2 3 4 range
A 433
(-3)
P 		1044
(1.8)
P 		1193.4
(3)
P 		445.5
(-2.9)
P 		760
B 466.4
(-2.8)
P 		996.7
(1)
P 		1266.3
(3)
P 		440.6
(-3)
P 		826
C 433.3
(-2.7)
P 		994.7
(0.7)
P 		1387.8
(3)
P 		382.5
(-3)
P 		1005
avr 444.2
(-2.9) 		1011.8
(1.1) 		1282.5
(3) 		422.9
(-3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1182
1 2 3 4 5 6 range
A 913.4
(-0.8)
P 		836.8
(-1.2)
P 		785.1
(-1.5)
P 		1469.2
(2.1)
P 		1651.8
(3)
P 		495.1
(-3)
P 		1157
B 864
(-1.3)
P 		990.9
(-0.7)
P 		777.1
(-1.8)
P 		1677.1
(3)
P 		1480.8
(2)
P 		555.3
(-3)
P 		1122
C 635.2
(-2.4)
P 		993
(-0.4)
P 		858.6
(-1.2)
P 		1609.8
(3)
P 		1348.4
(1.6)
P 		523.8
(-3)
P 		1086
avr 804.2
(-1.4) 		940.2
(-0.6) 		806.9
(-1.4) 		1585.4
(3) 		1493.7
(2.5) 		524.7
(-3) 		1061
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 157.7
(-0.8)
P 		226.6
(0.9)
P 		312
(3)
P 		65.2
(-3)
P 		247
B 148.7
(-1.4)
P 		246.2
(1.6)
P 		293.4
(3)
P 		93.9
(-3)
P 		200
C 143.4
(-1.9)
P 		286
(0.2)
P 		483.7
(3)
P 		64.5
(-3)
P 		419
avr 149.9
(-1.4) 		252.9
(0.7) 		363
(3) 		74.5
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 168.4
(-2.2)
P 		297.6
(-0.2)
P 		171
(-2.2)
P 		372.6
(1)
P 		498.5
(3)
P 		120.5
(-3)
P 		378
B 300.6
(-1.4)
P 		329.8
(-0.9)
P 		188.7
(-3)
P 		444.2
(0.7)
P 		601.6
(3)
P 		207.1
(-2.7)
P 		413
C 235.4
(-1.6)
P 		303
(-0.1)
P 		218.5
(-2)
P 		323.7
(0.4)
P 		436.3
(3)
P 		175.4
(-3)
P 		261
avr 234.8
(-1.8) 		310.1
(-0.5) 		192.7
(-2.6) 		380.2
(0.7) 		512.1
(3) 		167.7
(-3) 		344
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22415
Sequence Type Exemplar sequence
Representative Public ID C53095 NCBI
Target Description C53095_rc /REP_DB=TREMBL Accession /GB=C53095 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk288g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F47B7.2a ENSEMBL cdna:known chromosome:CEL140:X:3772742:3778041:1 gene:F47B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3777192-3777470(+) 100.0 100.0
Public Domain and Genome References
Ensembl F47B7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80371 Hypothetical protein F47B7.2a [Caenorhabditis elegans] ref|NP_508654.1| F47B7.2a [Caenorhabditis elegans] 0.0
blast AAK72058 Hypothetical protein F47B7.2c [Caenorhabditis elegans] ref|NP_508653.1| F47B7.2c [Caenorhabditis elegans] 0.0
blast AAK72057 Hypothetical protein F47B7.2b [Caenorhabditis elegans] ref|NP_508652.1| F47B7.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 1.6E-15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
F47B7.2a 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:174388_AT
tcttctactccttttcatatcatatgtcatgtccagctaccattttttcctacaagttgt
gtgtctgttgtgtaaactgaagaaaaagccggtcttagttagttgcatacggcactgacc
tacttcaaaccagctacatgcaaacgtcgtgttgtgttttgtctttgaaatgtcataata
attctagtgatacatctcatctaatttatttcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTACTCCTTTTCATATCATAT 372 617 13 Antisense
TCATATGTCATGTCCAGCTACCATT 112 619 32 Antisense
GCTACCATTTTTTCCTACAAGTTGT 482 303 48 Antisense
GTTGTGTGTCTGTTGTGTAAACTGA 385 437 68 Antisense
AAGCCGGTCTTAGTTAGTTGCATAC 26 149 98 Antisense
TTGCATACGGCACTGACCTACTTCA 55 703 115 Antisense
TGACCTACTTCAAACCAGCTACATG 647 569 128 Antisense
ACCAGCTACATGCAAACGTCGTGTT 103 85 141 Antisense
ACGTCGTGTTGTGTTTTGTCTTTGA 387 95 156 Antisense
TAATTCTAGTGATACATCTCATCTA 189 635 191 Antisense
ACATCTCATCTAATTTATTTCAGCA 377 105 204 Antisense
Sequence Source Affymetrix Proprietary Database