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[174387_at]

Description C58074_rc /REP_DB=TREMBL Accession /GB=C58074 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311a9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 60      6grp_total > 38      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 614.9
(-0.4)
P 		423.7
(-3)
P 		432.4
(-2.9)
P 		856.7
(3)
P 		433
B 472.6
(-1.9)
P 		469.7
(-2)
P 		354.3
(-3)
P 		1017.4
(3)
P 		663
C 640.7
(-1.6)
P 		593.1
(-2.8)
P 		584.5
(-3)
P 		822.2
(3)
P 		238
avr 576.1
(-1.4) 		495.5
(-2.5) 		457.1
(-3) 		898.8
(3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 435.7
(2.5)
P 		449.6
(3)
P 		295.3
(-3)
P 		321.3
(-2)
P 		436.2
(2.5)
P 		391.7
(0.7)
P 		154
B 588.4
(3)
P 		490.5
(1.1)
P 		273
(-3)
P 		394.4
(-0.7)
P 		415.8
(-0.3)
P 		508.9
(1.5)
P 		315
C 713.8
(3)
P 		363.3
(-1.1)
P 		314.2
(-1.7)
P 		203.5
(-3)
P 		445
(-0.2)
P 		520.7
(0.7)
P 		510
avr 579.3
(3) 		434.5
(-0) 		294.2
(-3) 		306.4
(-2.7) 		432.3
(-0.1) 		473.8
(0.8) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 223.9
(3)
P 		92
(-3)
P 		113
(-2)
P 		125.4
(-1.5)
P 		132
B 150.7
(0.1)
P 		116
(-1.5)
P 		82.1
(-3)
P 		216.8
(3)
P 		135
C 212.1
(3)
P 		170.5
(-0.4)
P 		203.7
(2.3)
P 		138.6
(-3)
P 		74
avr 195.6
(3) 		126.2
(-3) 		132.9
(-2.4) 		160.3
(-0.1) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 80.3
(-2)
P 		159.9
(3)
P 		64.3
(-3)
P 		81.5
(-1.9)
P 		131.6
(1.2)
P 		95.4
(-1)
P 		96
B 204.7
(3)
P 		163.3
(1.2)
P 		66.3
(-3)
P 		104.5
(-1.3)
P 		169
(1.5)
P 		189.8
(2.4)
P 		138
C 264.6
(3)
P 		110.9
(-1.1)
P 		80
(-2)
P 		40.9
(-3)
P 		144
(-0.2)
P 		174.3
(0.6)
P 		224
avr 183.2
(3) 		144.7
(1) 		70.2
(-3) 		75.6
(-2.7) 		148.2
(1.1) 		153.2
(1.4) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22453
Sequence Type Exemplar sequence
Representative Public ID C58074 NCBI
Target Description C58074_rc /REP_DB=TREMBL Accession /GB=C58074 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075805 NCBI Caenorhabditis elegans K03E6.7 (K03E6.7) mRNA, complete cds. 11/11 B 
K03E6.7.1 ENSEMBL cdna:known chromosome:CEL140:X:1084224:1088147:-1 gene:K03E6.7 11/11 None
K03E6.7.2 ENSEMBL cdna:known chromosome:CEL140:X:1084227:1088145:-1 gene:K03E6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010593 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010596 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1084290-1084570(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03E6.7
Entrez Gene 180461 Entrez gene
SwissProt Q21194 EMBL-EBI
WormBase CE31197 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588464_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE:1585877_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.1088.1.A1_S_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.20745.1.S1_S_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.2341.1.A1_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFAAFFX.9996.1.S1_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
DROSOPHILA_2:1637004_AT parcas dm
DROSGENOME1:152264_AT parcas dm
CHICKEN:GGAAFFX.12494.1.S1_S_AT SH3-domain binding protein 5 (BTK-associated) gga
HG-U133A_2:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A_2:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-FOCUS:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBA:W56613_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBA:W38687_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBC:RC_AA421244_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBD:RC_C14585_F_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:G4759057_3P_A_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:HS.109150.0.S1_3P_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U95AV2:38968_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:227591_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133B:227591_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBB:RC_N66918_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:HS.109150.1.A1_3P_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U95B:44587_AT SH3-domain binding protein 5 (BTK-associated) hs
MOUSE430A_2:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MOE430A:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430_2:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MG-U74AV2:98766_AT SH3-domain binding protein 5 (BTK-associated) mm
MOE430A:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430A_2:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430_2:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MU19KSUBB:TC30856_AT SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone MGC:7213 IMAGE:3482670) mm
MU19KSUBC:TC37003_AT SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone MGC:7213 IMAGE:3482670) mm
RAE230A:1387294_AT SH3-domain binding protein 5 (BTK-associated) rn
RAT230_2:1387294_AT SH3-domain binding protein 5 (BTK-associated) rn
Protein Similarities
Method ID Description E-Value
blast AAC69046 Hypothetical protein K03E6.7 [Caenorhabditis elegans] ref|NP_508206.2| K03E6.7 [Caenorhabditis elegans] 0.0
blast CAE63574 Hypothetical protein CBG08062 [Caenorhabditis briggsae] 0.0
blast XP_394025 PREDICTED: hypothetical protein XP_394025 [Apis mellifera] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007940 EMBL-EBI SH3-binding 5 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174387_AT
aaaagtgtatcaaatgctcatgaatagattgtcaagtcaaaaatctgtaatcttgactgt
atcaatttccatgtatcttcattttacaaaatctcttttctaccgttttactttgtattt
tccctcccccaatcttttcagaaattcaaaaattggccccttcacgttttctaatagttt
tagggctctcgcaagtctccgggtggacgcctctttgtttgtctaaacgtttttctctct
caca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTGTATCAAATGCTCATGAAT 76 133 14 Antisense
TGCTCATGAATAGATTGTCAAGTCA 542 579 28 Antisense
AAAATCTGTAATCTTGACTGTATCA 259 133 53 Antisense
TGTATCAATTTCCATGTATCTTCAT 346 561 71 Antisense
CAATTTCCATGTATCTTCATTTTAC 667 179 76 Antisense
TCATTTTACAAAATCTCTTTTCTAC 29 619 92 Antisense
CTCCCCCAATCTTTTCAGAAATTCA 463 233 137 Antisense
TAGTTTTAGGGCTCTCGCAAGTCTC 26 617 188 Antisense
TGGACGCCTCTTTGTTTGTCTAAAC 499 547 217 Antisense
GACGCCTCTTTGTTTGTCTAAACGT 524 381 219 Antisense
TGTCTAAACGTTTTTCTCTCTCACA 130 559 233 Antisense
Sequence Source Affymetrix Proprietary Database