[Home] | [Total List]

[174386_at]

Description C53455_rc /REP_DB=TREMBL Accession /GB=C53455 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 30      6grp_total > 18      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 818.4
(3)
P 		628.8
(-0.6)
P 		500.8
(-3)
P 		593.4
(-1.3)
P 		318
B 776.9
(3)
P 		562.4
(-0.5)
P 		409
(-3)
P 		648.5
(0.9)
P 		368
C 810.1
(3)
P 		529.3
(-3)
P 		576.8
(-2)
P 		635.1
(-0.7)
P 		281
avr 801.8
(3) 		573.5
(-1.5) 		495.5
(-3) 		625.7
(-0.4) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1332
1 2 3 4 5 6 range
A 1164
(3)
P 		701.2
(-1.1)
P 		592.9
(-2.1)
P 		514.6
(-2.8)
P 		489
(-3)
P 		538.7
(-2.6)
P 		675
B 1606.1
(3)
P 		787.8
(-0.9)
P 		349.7
(-3)
P 		466.4
(-2.4)
P 		556.5
(-2)
P 		613
(-1.7)
P 		1256
C 1681.6
(3)
P 		752.5
(-1.5)
P 		466.6
(-2.9)
P 		437.3
(-3)
P 		681.2
(-1.8)
P 		552.2
(-2.4)
P 		1244
avr 1483.9
(3) 		747.2
(-1.4) 		469.7
(-3) 		472.8
(-3) 		575.6
(-2.4) 		568
(-2.4) 		1014
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 298
(3)
P 		136.5
(-1.6)
P 		130.9
(-1.7)
P 		86.9
(-3)
P 		211
B 247.8
(3)
P 		138.9
(-1.3)
P 		94.8
(-3)
P 		138.2
(-1.3)
P 		153
C 268.2
(3)
P 		152.2
(-1.3)
P 		201
(0.5)
P 		107.1
(-3)
P 		161
avr 271.3
(3) 		142.5
(-1.8) 		142.2
(-1.8) 		110.7
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 214.6
(1.3)
P 		249.4
(3)
P 		129.1
(-3)
P 		130.5
(-2.9)
P 		147.6
(-2.1)
P 		131.1
(-2.9)
P 		120
B 558.8
(3)
P 		262.2
(-0.8)
P 		84.9
(-3)
P 		123.5
(-2.5)
P 		226.1
(-1.2)
P 		228.6
(-1.2)
P 		474
C 623.3
(3)
P 		229.6
(-1.4)
P 		118.8
(-2.7)
P 		87.9
(-3)
P 		220.4
(-1.5)
P 		184.9
(-1.9)
P 		535
avr 465.6
(3) 		247.1
(-0.7) 		110.9
(-3) 		114
(-2.9) 		198
(-1.5) 		181.5
(-1.8) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20913
Sequence Type Exemplar sequence
Representative Public ID C53455 NCBI
Target Description C53455_rc /REP_DB=TREMBL Accession /GB=C53455 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027584 NCBI Caenorhabditis elegans T07C4.9a (Annexin) mRNA, complete cds. 11/11 None
T07C4.9a.2 ENSEMBL cdna:known chromosome:CEL140:III:10325522:10330310:-1 gene:T07C4.9 11/11 None
T07C4.9a.1 ENSEMBL cdna:known chromosome:CEL140:III:10325522:10330308:-1 gene:T07C4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176446 2 1 NM_001027584 174386_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10325582-10325867(-) 60.35 100.0
Public Domain and Genome References
Ensembl T07C4.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45742 Hypothetical protein T07C4.9b [Caenorhabditis elegans] ref|NP_001022756.1| T07C4.9b [Caenorhabditis elegans] 1.0E-179
blast CAA82571 Hypothetical protein T07C4.9a [Caenorhabditis elegans] ref|NP_001022755.1| T07C4.9a [Caenorhabditis elegans] 1.0E-179
blast CAE56797 Hypothetical protein CBG24609 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001464 EMBL-EBI Annexin 1.2E-31
Pfam IPR001464 EMBL-EBI Annexin 1.7E-34
Pfam IPR001464 EMBL-EBI Annexin 1.6E-26
Pfam IPR001464 EMBL-EBI Annexin 1.3E-26
Sequence
Target Sequence 
>C. ELEGANS:174386_AT
tcaactgatttcgcatggttaagagtgtgctgacgtcacacattcatggggaaaaattac
cgcattttttgtagatcaaacctcattgagacaaattgacaccacgtgaacttgtattta
ccatttccctcttttctcttatcacacacaaaaaattacgcatctggctttttatcaaaa
taatcatttcttctattccatttttgtaaggctttactgtaggtatgcctgcctacgagg
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTGATTTCGCATGGTTAAGAG 194 629 18 Antisense
TGCTGACGTCACACATTCATGGGGA 332 583 45 Antisense
TGTAGATCAAACCTCATTGAGACAA 106 561 87 Antisense
TGAGACAAATTGACACCACGTGAAC 637 567 104 Antisense
GACACCACGTGAACTTGTATTTACC 517 367 115 Antisense
GAACTTGTATTTACCATTTCCCTCT 664 349 125 Antisense
CTCTTTTCTCTTATCACACACAAAA 196 231 146 Antisense
AATTACGCATCTGGCTTTTTATCAA 709 175 171 Antisense
CATTTCTTCTATTCCATTTTTGTAA 318 215 202 Antisense
GGCTTTACTGTAGGTATGCCTGCCT 584 535 227 Antisense
TGTAGGTATGCCTGCCTACGAGGCG 566 557 235 Antisense
Sequence Source Affymetrix Proprietary Database