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[174385_at]

Description C37254_rc /REP_DB=TREMBL Accession /GB=C37254 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk462d6 : 3prime end, single read.
Cluster 6grp_total > 92      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 23
(-2.3)
A 		6.6
(-3)
A 		22.7
(-2.3)
A 		150
(3)
A 		143
B 24.3
(-2.8)
A 		25.9
(-2.5)
A 		23.4
(-3)
A 		55.9
(3)
A 		33
C 51.3
(-1.6)
A 		34.2
(-2.3)
A 		17.6
(-3)
A 		162.4
(3)
A 		145
avr 32.9
(-2.3) 		22.2
(-2.9) 		21.2
(-3) 		122.8
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 85.2
(3)
A 		32.5
(-1.3)
A 		81.6
(2.7)
A 		11.6
(-3)
A 		58.7
(0.8)
A 		12.8
(-2.9)
A 		74
B 26.3
(-1.4)
A 		33.5
(-0.1)
A 		21.4
(-2.2)
A 		29.2
(-0.9)
A 		50.7
(3)
A 		17.2
(-3)
A 		34
C 14.7
(-3)
A 		44.5
(0.6)
A 		17.6
(-2.6)
A 		64.3
(3)
A 		50.3
(1.3)
A 		18.4
(-2.6)
A 		50
avr 42.1
(1.2) 		36.8
(0.3) 		40.2
(0.9) 		35
(0.1) 		53.2
(3) 		16.1
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 8.4
(-1)
A 		1.4
(-3)
A 		5.9
(-1.7)
A 		22
(3)
A 		21
B 7.7
(-0.9)
A 		6.4
(-2.1)
A 		5.4
(-3)
A 		11.9
(3)
A 		7
C 17
(0.1)
A 		9.8
(-2)
A 		6.1
(-3)
A 		27.4
(3)
A 		21
avr 11
(-0.9) 		5.9
(-3) 		5.8
(-3) 		20.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15.7
(2.2)
A 		11.6
(0.5)
A 		17.8
(3)
A 		2.9
(-3)
A 		17.7
(3)
A 		3.1
(-2.9)
A 		15
B 9.1
(-1.5)
A 		11.1
(-0.7)
A 		5.2
(-3)
A 		7.7
(-2)
A 		20.6
(3)
A 		6.4
(-2.5)
A 		15
C 5.5
(-2.5)
A 		13.6
(1.6)
A 		4.5
(-3)
A 		12.9
(1.3)
A 		16.3
(3)
A 		6.1
(-2.2)
A 		12
avr 10.1
(-0.7) 		12.1
(0.2) 		9.2
(-1.2) 		7.8
(-1.8) 		18.2
(3) 		5.2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21980
Sequence Type Exemplar sequence
Representative Public ID C37254 NCBI
Target Description C37254_rc /REP_DB=TREMBL Accession /GB=C37254 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk462d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043467 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2594924:2598757:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2594953-2595233(-) 36.43 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42291 Hypothetical protein F53E10.5 [Caenorhabditis elegans] ref|NP_503712.1| F53E10.5 [Caenorhabditis elegans] 5.0E-94
blast CAA22092 Hypothetical protein Y75B8A.32 [Caenorhabditis elegans] ref|NP_499605.1| Y75B8A.32 [Caenorhabditis elegans] 4.0E-53
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:174385_AT
taccatatgggggcaaatagctcacaatcagtcggtagtggtggccgcgagcaatctgga
ggtcacgagttcaagtccggcctcagcctataggtctctattgggagataaagcaatcca
cgactggcttatcggccacagtctccggctagaacgtgactcggtgggatcaccaccagg
cagtgtttgagccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCATATGGGGGCAAATAGCTCAC 120 651 37 Antisense
AAATAGCTCACAATCAGTCGGTAGT 210 117 51 Antisense
TCAGTCGGTAGTGGTGGCCGCGAGC 443 623 64 Antisense
CCGCGAGCAATCTGGAGGTCACGAG 634 261 81 Antisense
GCCTCAGCCTATAGGTCTCTATTGG 425 281 116 Antisense
AGCAATCCACGACTGGCTTATCGGC 689 75 148 Antisense
ACGACTGGCTTATCGGCCACAGTCT 199 37 156 Antisense
CCACAGTCTCCGGCTAGAACGTGAC 581 273 172 Antisense
GGCTAGAACGTGACTCGGTGGGATC 542 535 183 Antisense
GTGACTCGGTGGGATCACCACCAGG 520 481 192 Antisense
ACCACCAGGCAGTGTTTGAGCCAAG 657 83 208 Antisense
Sequence Source Affymetrix Proprietary Database