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[174380_at]

Description C31545_rc /REP_DB=TREMBL Accession /GB=C31545 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk284e3 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 23
(-1.5)
A 		6.5
(-2.7)
A 		2.8
(-3)
A 		81.2
(3)
A 		78
B 10.9
(-3)
A 		14.4
(-1.8)
A 		11.6
(-2.8)
A 		28.9
(3)
A 		18
C 1.9
(-3)
A 		30.5
(-0.7)
A 		6.6
(-2.6)
A 		75.8
(3)
M 		74
avr 11.9
(-2.5) 		17.1
(-1.9) 		7
(-3) 		62
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.9
(-3)
A 		23
(3)
A 		19.4
(1.9)
A 		10.6
(-0.9)
A 		3.8
(-3)
A 		15.2
(0.6)
A 		19
B 17.6
(3)
A 		11.6
(0.7)
A 		1.8
(-3)
A 		3
(-2.5)
A 		3.8
(-2.2)
A 		16
(2.4)
A 		16
C 2.7
(-3)
A 		33.8
(3)
A 		8
(-2)
A 		20.8
(0.5)
A 		6.6
(-2.2)
A 		9.9
(-1.6)
A 		31
avr 8.1
(-1.9) 		22.8
(3) 		9.7
(-1.3) 		11.5
(-0.7) 		4.7
(-3) 		13.7
(-0) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.4
(1.1)
A 		1.4
(-2.6)
A 		0.7
(-3)
A 		11.9
(3)
A 		11
B 3.5
(-1.6)
A 		3.6
(-1.5)
A 		2.7
(-3)
A 		6.2
(3)
A 		4
C 0.6
(-3)
A 		8.8
(1)
A 		2.3
(-2.2)
A 		12.8
(3)
M 		12
avr 4.2
(-1.4) 		4.6
(-1.1) 		1.9
(-3) 		10.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-3)
A 		8.2
(3)
A 		4.2
(-0.2)
A 		2.7
(-1.4)
A 		1.1
(-2.7)
A 		3.7
(-0.6)
A 		8
B 6.1
(3)
A 		3.9
(0.7)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		1.5
(-1.8)
A 		6
(2.9)
A 		6
C 1
(-3)
A 		10.3
(3)
A 		2
(-2.4)
A 		4.2
(-0.9)
A 		2.1
(-2.3)
A 		3.3
(-1.5)
A 		9
avr 2.6
(-2) 		7.5
(3) 		2.2
(-2.4) 		2.6
(-2) 		1.6
(-3) 		4.3
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22159
Sequence Type Exemplar sequence
Representative Public ID C31545 NCBI
Target Description C31545_rc /REP_DB=TREMBL Accession /GB=C31545 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk284e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C31545
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C31545 C31545_rc /REP_DB=TREMBL Accession /GB=C31545 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk284e3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4616661-4616940(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174380_AT
tttttagttgccttcttttatagtgtctttatagtagagagttttactggaccatagaga
cgcagagagtgttcgaaacgagagaagaatggttttcgtgttggcagttattgattttcg
agtaccccattttcccgcgcaatttttccatttgaattttgtgcatgtctttcttgtcat
attattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTAGTTGCCTTCTTTTATAGTG 346 673 75 Antisense
GTTGCCTTCTTTTATAGTGTCTTTA 213 441 81 Antisense
GTAGAGAGTTTTACTGGACCATAGA 79 457 108 Antisense
TTTACTGGACCATAGAGACGCAGAG 453 673 117 Antisense
AGACGCAGAGAGTGTTCGAAACGAG 634 65 132 Antisense
GAAGAATGGTTTTCGTGTTGGCAGT 435 339 158 Antisense
GGTTTTCGTGTTGGCAGTTATTGAT 650 505 165 Antisense
GTTATTGATTTTCGAGTACCCCATT 320 447 181 Antisense
ATTTTTCCATTTGAATTTTGTGCAT 385 15 216 Antisense
AATTTTGTGCATGTCTTTCTTGTCA 559 175 229 Antisense
GCATGTCTTTCTTGTCATATTATTT 247 311 237 Antisense
Sequence Source Affymetrix Proprietary Database