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[174378_at]

Description C35459_rc /REP_DB=TREMBL Accession /GB=C35459 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk433c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      6grp_highest_nonorm > 80      6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 62.7
(-2.4)
A 		545.7
(3)
P 		440.5
(1.8)
P 		4.6
(-3)
A 		541
B 53.4
(-2.4)
A 		518.9
(3)
P 		490.4
(2.7)
P 		5.5
(-3)
A 		513
C 42.4
(-3)
A 		527.9
(3)
P 		432.1
(1.8)
P 		69.6
(-2.7)
A 		486
avr 52.8
(-2.7) 		530.8
(3) 		454.3
(2.1) 		26.6
(-3) 		504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 128
(-3)
P 		414.9
(3)
P 		162.8
(-2.3)
P 		220.3
(-1.1)
P 		201.4
(-1.5)
P 		147
(-2.6)
P 		287
B 136.3
(-3)
P 		383.3
(3)
P 		167.1
(-2.3)
P 		263.7
(0.1)
P 		194.7
(-1.6)
P 		141.4
(-2.9)
P 		247
C 123.4
(-3)
P 		345.2
(3)
P 		211.5
(-0.6)
P 		208.4
(-0.7)
P 		295.8
(1.7)
P 		123.2
(-3)
P 		222
avr 129.2
(-3) 		381.1
(3) 		180.5
(-1.8) 		230.8
(-0.6) 		230.6
(-0.6) 		137.2
(-2.8) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 22.8
(-1.9)
A 		118.5
(3)
P 		115.1
(2.8)
P 		0.7
(-3)
A 		118
B 17
(-2.3)
A 		128.2
(3)
P 		113.6
(2.3)
P 		1.2
(-3)
A 		127
C 14
(-2.9)
A 		151.8
(3)
P 		150.6
(2.9)
P 		11.7
(-3)
A 		140
avr 17.9
(-2.4) 		132.8
(3) 		126.4
(2.7) 		4.5
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 23.6
(-3)
P 		147.6
(3)
P 		35.5
(-2.4)
P 		55.9
(-1.4)
P 		60.8
(-1.2)
P 		35.8
(-2.4)
P 		124
B 47.4
(-2.5)
P 		127.6
(3)
P 		40.6
(-3)
P 		69.9
(-1)
P 		79.1
(-0.3)
P 		52.7
(-2.2)
P 		87
C 45.8
(-2.6)
P 		105.3
(3)
P 		53.8
(-1.8)
P 		41.9
(-2.9)
P 		95.7
(2.1)
P 		41.2
(-3)
P 		64
avr 38.9
(-3) 		126.8
(3) 		43.3
(-2.7) 		55.9
(-1.8) 		78.5
(-0.3) 		43.2
(-2.7) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20047
Sequence Type Exemplar sequence
Representative Public ID C35459 NCBI
Target Description C35459_rc /REP_DB=TREMBL Accession /GB=C35459 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk433c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182009(11), NM_058379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182009 NCBI Caenorhabditis elegans T06A4.1b (carboxypeptidase) mRNA, complete cds. 11/11 A 
NM_058379 NCBI Caenorhabditis elegans T06A4.1a (carboxypeptidase) mRNA, complete cds. 11/11 A 
SNAP00000004752 ENSEMBL cdna:SNAP chromosome:CEL140:I:770969:785068:1 11/11 None
T06A4.1b ENSEMBL cdna:known chromosome:CEL140:I:770894:776346:1 gene:T06A4.1 11/11 A 
T06A4.1a ENSEMBL cdna:known chromosome:CEL140:I:770969:776303:1 gene:T06A4.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004753 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:775419-776296(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06A4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_871809 T06A4.1b [Caenorhabditis elegans] gb|AAO21390.1| Hypothetical protein T06A4.1b [Caenorhabditis elegans] 0.0
blast NP_490780 T06A4.1a [Caenorhabditis elegans] gb|AAC67473.3| Hypothetical protein T06A4.1a [Caenorhabditis elegans] 0.0
blast CAE61324 Hypothetical protein CBG05161 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-8
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.6E-69
Pfam IPR003146 EMBL-EBI Peptidase M14A, carboxypeptidase activation peptide 1.4E-9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-8
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-8
Sequence
Target Sequence 
>C. ELEGANS:174378_AT
ttccacatcctctgagacaagtaccacagagaattctgaacccaaccagaagacatccac
accagtggcacctgaagcaagcaccgttgaggaggaaacaatcacaccgatcaaatgcgt
cgactacggtgactactgtcgtctttggggagtcttacagctctgctatcgggatcaggt
ctccaagttgtgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCACATCCTCTGAGACAAGTACC 579 699 74 Antisense
CACAGAGAATTCTGAACCCAACCAG 215 193 98 Antisense
AGAAGACATCCACACCAGTGGCACC 352 73 121 Antisense
CAGTGGCACCTGAAGCAAGCACCGT 228 209 136 Antisense
GAGGAGGAAACAATCACACCGATCA 564 403 162 Antisense
ATCACACCGATCAAATGCGTCGACT 358 27 174 Antisense
TGCGTCGACTACGGTGACTACTGTC 328 571 189 Antisense
ACTACTGTCGTCTTTGGGGAGTCTT 609 99 205 Antisense
TTGGGGAGTCTTACAGCTCTGCTAT 249 709 218 Antisense
GCTCTGCTATCGGGATCAGGTCTCC 570 299 233 Antisense
GGGATCAGGTCTCCAAGTTGTGCCC 620 495 244 Antisense
Sequence Source Affymetrix Proprietary Database