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[174377_at]

Description C58799_rc /REP_DB=TREMBL Accession /GB=C58799 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 523.9
(3)
P 		250.3
(-3)
P 		264.2
(-2.7)
P 		316.4
(-1.6)
P 		274
B 435.3
(3)
P 		226.3
(-3)
P 		249.7
(-2.3)
P 		415.6
(2.4)
P 		209
C 454.4
(3)
P 		257.1
(-3)
P 		265.8
(-2.7)
P 		422.3
(2)
P 		197
avr 471.2
(3) 		244.6
(-3) 		259.9
(-2.6) 		384.8
(0.7) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 399.5
(3)
P 		318.5
(0.9)
P 		230.7
(-1.4)
P 		230
(-1.4)
P 		235.6
(-1.2)
P 		167
(-3)
P 		233
B 341
(0.4)
P 		432.4
(3)
P 		352.1
(0.7)
P 		225.1
(-3)
P 		258.4
(-2)
P 		253.8
(-2.2)
P 		207
C 395.7
(3)
P 		370.8
(2.1)
P 		269.8
(-1.5)
P 		263.9
(-1.7)
P 		227.6
(-3)
P 		261.5
(-1.8)
P 		168
avr 378.7
(3) 		373.9
(2.8) 		284.2
(-0.7) 		239.7
(-2.5) 		240.5
(-2.5) 		227.4
(-3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 190.8
(3)
P 		54.3
(-2.7)
P 		69.1
(-2.1)
P 		46.3
(-3)
P 		145
B 138.8
(3)
P 		55.9
(-3)
P 		57.9
(-2.9)
P 		88.6
(-0.6)
P 		83
C 150.4
(3)
P 		73.9
(-2.8)
P 		92.6
(-1.4)
P 		71.2
(-3)
P 		79
avr 160
(3) 		61.4
(-3) 		73.2
(-2.3) 		68.7
(-2.6) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 73.6
(-0.3)
P 		113.3
(3)
P 		50.3
(-2.2)
P 		58.3
(-1.5)
P 		71.1
(-0.5)
P 		40.7
(-3)
P 		73
B 118.6
(1.2)
P 		143.9
(3)
P 		85.5
(-1.2)
P 		59.6
(-3)
P 		105
(0.2)
P 		94.6
(-0.5)
P 		84
C 146.7
(3)
P 		113.1
(0.8)
P 		68.7
(-2)
P 		53.1
(-3)
P 		73.7
(-1.7)
P 		87.5
(-0.8)
P 		94
avr 113
(2.1) 		123.4
(3) 		68.2
(-2) 		57
(-3) 		83.3
(-0.6) 		74.3
(-1.4) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22445
Sequence Type Exemplar sequence
Representative Public ID C58799 NCBI
Target Description C58799_rc /REP_DB=TREMBL Accession /GB=C58799 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076119 NCBI Caenorhabditis elegans M02F4.3 (M02F4.3) mRNA, complete cds. 11/11 None
M02F4.3 ENSEMBL cdna:known chromosome:CEL140:X:3036424:3040723:-1 gene:M02F4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3036572-3036851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02F4.3
Entrez Gene 3565350 Entrez gene
SwissProt Q21469 EMBL-EBI
WormBase CE04764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83201 Hypothetical protein M02F4.3 [Caenorhabditis elegans] ref|NP_508520.1| M02F4.3 [Caenorhabditis elegans] 1.0E-135
blast CAE68366 Hypothetical protein CBG14120 [Caenorhabditis briggsae] 1.0E-113
blast NP_503052 C52D10.12 [Caenorhabditis elegans] gb|AAK77203.1| Hypothetical protein C52D10.12 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174377_AT
tacggttttattctcaattcgccttaaaaaggtcaatacataataatcgctccaggtgcg
ataacttttcctccattctttctctgatacaatttctattatttttcaattttttccaaa
atttcccgaccttatctcaaagtgaacttccaatatttccctagactaagtttgacggaa
tttcattttctttgtgttatgcacctttttgagtacgggccaatttctggtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGGTTTTATTCTCAATTCGCCTT 97 563 29 Antisense
AATACATAATAATCGCTCCAGGTGC 416 171 63 Antisense
CCAGGTGCGATAACTTTTCCTCCAT 692 271 80 Antisense
CCTCCATTCTTTCTCTGATACAATT 468 267 98 Antisense
AATTTCCCGACCTTATCTCAAAGTG 352 173 148 Antisense
CAAAGTGAACTTCCAATATTTCCCT 284 191 166 Antisense
TATTTCCCTAGACTAAGTTTGACGG 389 449 182 Antisense
GTTTGACGGAATTTCATTTTCTTTG 51 451 198 Antisense
ATTTTCTTTGTGTTATGCACCTTTT 215 15 213 Antisense
TATGCACCTTTTTGAGTACGGGCCA 675 653 226 Antisense
TTGAGTACGGGCCAATTTCTGGTGT 1 705 237 Antisense
Sequence Source Affymetrix Proprietary Database