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[174376_at]

Description C58619_rc /REP_DB=TREMBL Accession /GB=C58619 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk368h8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 69      4grp_high_8_8 > 22      6grp_total > 89      4grp_total > 0      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 87
(0.3)
P 		46.7
(-3)
A 		101.1
(1.5)
P 		119.9
(3)
P 		73
B 80.3
(-3)
P 		85.9
(-1.9)
A 		83.1
(-2.5)
A 		111.4
(3)
P 		31
C 90.7
(-1.3)
P 		91.1
(-1.1)
P 		84.8
(-3)
P 		105.1
(3)
P 		20
avr 86
(-1.2) 		74.6
(-3) 		89.7
(-0.6) 		112.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 94.2
(1.5)
P 		84.2
(0.5)
P 		50.5
(-3)
A 		86.6
(0.7)
P 		109.1
(3)
P 		106.1
(2.7)
P 		59
B 90.7
(-1.7)
P 		94.9
(-1.5)
P 		65.9
(-3)
P 		93.2
(-1.6)
P 		146.2
(1.2)
P 		180.9
(3)
P 		115
C 110.7
(-0.4)
P 		130.4
(0.7)
P 		62.5
(-3)
P 		90.4
(-1.5)
A 		129.6
(0.6)
P 		173.8
(3)
P 		111
avr 98.5
(-0.5) 		103.2
(-0.2) 		59.6
(-3) 		90.1
(-1.1) 		128.3
(1.4) 		153.6
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 31.7
(3)
P 		10.1
(-3)
A 		26.4
(1.5)
P 		17.6
(-0.9)
P 		22
B 25.6
(3)
P 		21.2
(-1.2)
A 		19.3
(-3)
A 		23.7
(1.2)
P 		6
C 30
(3)
P 		26.2
(1.1)
P 		29.6
(2.8)
P 		17.7
(-3)
P 		12
avr 29.1
(3) 		19.2
(-3) 		25.1
(0.6) 		19.7
(-2.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 17.4
(-1.2)
P 		29.9
(2.2)
P 		11
(-3)
A 		22
(0)
P 		32.9
(3)
P 		25.8
(1.1)
P 		22
B 31.6
(-1.2)
P 		31.6
(-1.2)
P 		16
(-3)
P 		24.7
(-2)
P 		59.4
(2.1)
P 		67.4
(3)
P 		51
C 41
(0.6)
P 		39.8
(0.4)
P 		15.9
(-3)
P 		18.2
(-2.7)
A 		41.9
(0.7)
P 		58.2
(3)
P 		42
avr 30
(-0.4) 		33.8
(0.2) 		14.3
(-3) 		21.6
(-1.8) 		44.7
(2) 		50.5
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20643
Sequence Type Exemplar sequence
Representative Public ID C58619 NCBI
Target Description C58619_rc /REP_DB=TREMBL Accession /GB=C58619 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk368h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F57C2.6 ENSEMBL cdna:known chromosome:CEL140:II:14528645:14534006:1 gene:F57C2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14533710-14533993(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03846 Hypothetical protein F57C2.6 [Caenorhabditis elegans] emb|CAB05528.3| Hypothetical protein F57C2.6 [Caenorhabditis elegans] ref|NP_497020.2| F57C2.6 [Caenorhabditis elegans] 0.0
blast CAE73428 Hypothetical protein CBG20871 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:174376_AT
tccatataatttttaattccatctgatcttcatattgcttgtatcattttctgtgatttt
tatgttctttatggcttcaaaaaatggtccaaaagacctcaaaaaatcctgtactgattc
gttccatattaattgacattttcaatatctaaaagttatatagtttttctccttctttct
gttcttttgatccaactttttcgtgtctttttcctgtgttttctggttttgtcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATATAATTTTTAATTCCATCTG 444 591 30 Antisense
ATTCCATCTGATCTTCATATTGCTT 677 7 45 Antisense
TCTTCATATTGCTTGTATCATTTTC 316 617 56 Antisense
TGATTTTTATGTTCTTTATGGCTTC 696 563 83 Antisense
GACCTCAAAAAATCCTGTACTGATT 26 383 124 Antisense
TCCTGTACTGATTCGTTCCATATTA 673 591 136 Antisense
GATTCGTTCCATATTAATTGACATT 26 433 145 Antisense
CCTTCTTTCTGTTCTTTTGATCCAA 364 269 200 Antisense
TGATCCAACTTTTTCGTGTCTTTTT 491 563 217 Antisense
TGTCTTTTTCCTGTGTTTTCTGGTT 301 559 233 Antisense
TCCTGTGTTTTCTGGTTTTGTCGAC 313 593 241 Antisense
Sequence Source Affymetrix Proprietary Database