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[174374_s_at]

Description C58014_rc /REP_DB=TREMBL Accession /GB=C58014 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk363g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 80      6grp_total > 13      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 328.4
(3)
P 		211.7
(-2.3)
P 		196.9
(-3)
P 		198.3
(-2.9)
P 		132
B 284.5
(1.8)
P 		321.8
(3)
P 		194.1
(-1.1)
P 		136.6
(-3)
P 		185
C 327.3
(3)
P 		155.3
(-2.8)
P 		172.2
(-2.2)
P 		148
(-3)
P 		179
avr 313.4
(3) 		229.6
(-0.3) 		187.7
(-1.9) 		161
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 298.8
(3)
P 		271.7
(1.8)
P 		275.5
(2)
P 		225.8
(-0.2)
P 		161.7
(-3)
P 		167.4
(-2.8)
P 		137
B 260.2
(2.5)
P 		192.9
(-1.3)
P 		192.6
(-1.3)
P 		269.4
(3)
P 		178.9
(-2.1)
P 		163.4
(-3)
P 		106
C 303.1
(2)
P 		282.4
(1.1)
P 		236
(-0.9)
P 		327.3
(3)
P 		258.2
(0)
P 		188.1
(-3)
P 		139
avr 287.4
(3) 		249
(1) 		234.7
(0.2) 		274.2
(2.3) 		199.6
(-1.6) 		173
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 119.6
(3)
P 		45.9
(-1.9)
P 		51.5
(-1.5)
P 		29
(-3)
P 		91
B 90.7
(3)
P 		79.5
(1.9)
P 		45
(-1.5)
P 		29.1
(-3)
P 		62
C 108.4
(3)
P 		44.6
(-1.6)
P 		60
(-0.5)
P 		25
(-3)
P 		83
avr 106.2
(3) 		56.7
(-0.8) 		52.2
(-1.1) 		27.7
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 55.1
(-1.5)
P 		96.6
(3)
P 		60
(-0.9)
P 		57.3
(-1.2)
P 		48.8
(-2.1)
P 		40.8
(-3)
P 		56
B 90.5
(3)
P 		64.2
(-0.6)
P 		46.8
(-3)
P 		71.4
(0.4)
P 		72.7
(0.6)
P 		60.9
(-1.1)
P 		44
C 112.3
(3)
P 		86.2
(0)
P 		60.1
(-3)
P 		65.8
(-2.3)
P 		83.5
(-0.3)
P 		63
(-2.7)
P 		52
avr 86
(3) 		82.3
(2.3) 		55.6
(-2.9) 		64.8
(-1.1) 		68.3
(-0.4) 		54.9
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174374_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22423
Sequence Type Exemplar sequence
Representative Public ID C58014 NCBI
Target Description C58014_rc /REP_DB=TREMBL Accession /GB=C58014 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk363g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076031 NCBI Caenorhabditis elegans F47G3.1 (F47G3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000042203 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2381584:2392591:1 11/11 None
SNAP00000042199 ENSEMBL cdna:SNAP chromosome:CEL140:X:2387295:2392591:1 11/11 None
F47G3.1 ENSEMBL cdna:known chromosome:CEL140:X:2385802:2392689:1 gene:F47G3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2392352-2392632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G3.1
Entrez Gene 180543 Entrez gene
SwissProt Q9GYN6 EMBL-EBI
WormBase CE29327 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99952 Hypothetical protein F47G3.1 [Caenorhabditis elegans] ref|NP_508432.1| F47G3.1 [Caenorhabditis elegans] 0.0
blast CAE58885 Hypothetical protein CBG02118 [Caenorhabditis briggsae] 0.0
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.0E-10
Pfam IPR003348 EMBL-EBI Anion-transporting ATPase 3.3E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042203 2 5-22,128-145
Sequence
Target Sequence 
>C. ELEGANS:174374_S_AT
agcaagaaagtttatcaatgatacggagctcgtttgtagtgaaacacagccgttgacagt
cgatgcaactaatgcaatatcacagaatattatcacatcctccacatcctcactgatatt
ttcaattcccttgccaatatccctactgttcatcttactggctcgttgttttctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGAAAGTTTATCAATGATACG 7 75 74 Antisense
TCGTTTGTAGTGAAACACAGCCGTT 5 605 103 Antisense
GAAACACAGCCGTTGACAGTCGATG 674 355 114 Antisense
ACACAGCCGTTGACAGTCGATGCAA 378 111 117 Antisense
AGCCGTTGACAGTCGATGCAACTAA 300 83 121 Antisense
TGACAGTCGATGCAACTAATGCAAT 332 569 127 Antisense
ACAGAATATTATCACATCCTCCACA 390 109 155 Antisense
CTCCACATCCTCACTGATATTTTCA 467 235 173 Antisense
TCCTCACTGATATTTTCAATTCCCT 708 591 180 Antisense
ACTGATATTTTCAATTCCCTTGCCA 68 99 185 Antisense
TCTTACTGGCTCGTTGTTTTCTGTA 11 617 226 Antisense
Sequence Source Affymetrix Proprietary Database