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[174372_s_at]

Description C54749_rc /REP_DB=TREMBL Accession /GB=C54749 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk398d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_high_8_8 > 40      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1290
1 2 3 4 range
A 1216.3
(3)
P 		289.9
(-1.8)
P 		405.7
(-1.2)
P 		69.3
(-3)
A 		1147
B 1356.9
(3)
P 		333.4
(-1.8)
P 		272.9
(-2)
P 		66.6
(-3)
P 		1290
C 1323.5
(3)
P 		288.1
(-2.1)
P 		362.8
(-1.7)
P 		109.6
(-3)
P 		1214
avr 1298.9
(3) 		303.8
(-1.9) 		347.1
(-1.7) 		81.8
(-3) 		1217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 755
1 2 3 4 5 6 range
A 644.7
(0.8)
P 		819.3
(3)
P 		443.9
(-1.7)
P 		731.6
(1.9)
P 		473
(-1.3)
P 		341.2
(-3)
P 		478
B 627
(1.1)
P 		442.8
(-1.6)
P 		531.2
(-0.3)
P 		751.6
(3)
P 		383.9
(-2.5)
P 		348.4
(-3)
P 		403
C 632.9
(-0.1)
P 		566.3
(-0.7)
P 		1029.2
(3)
P 		864.7
(1.7)
P 		437.8
(-1.7)
P 		274.2
(-3)
P 		755
avr 634.9
(1.1) 		609.5
(0.7) 		668.1
(1.5) 		782.6
(3) 		431.6
(-1.6) 		321.3
(-3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 442.9
(3)
P 		62.9
(-2.3)
P 		106.1
(-1.7)
P 		10.1
(-3)
A 		433
B 432.7
(3)
P 		82.3
(-2)
P 		63.2
(-2.3)
P 		14.2
(-3)
P 		419
C 438.1
(3)
P 		82.8
(-2.1)
P 		126.5
(-1.5)
P 		18.5
(-3)
P 		420
avr 437.9
(3) 		76
(-2.1) 		98.6
(-1.8) 		14.3
(-3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 118.8
(-2)
P 		291.4
(3)
P 		96.7
(-2.6)
P 		185.5
(-0.1)
P 		142.7
(-1.3)
P 		83.1
(-3)
P 		208
B 218.2
(3)
P 		147.4
(-1.8)
P 		129
(-3)
P 		199.1
(1.7)
P 		156
(-1.2)
P 		129.9
(-2.9)
P 		89
C 234.6
(2)
P 		172.8
(-0.1)
P 		262
(3)
P 		173.9
(-0.1)
P 		141.7
(-1.2)
P 		91.8
(-3)
P 		170
avr 190.5
(2.2) 		203.9
(3) 		162.6
(0.6) 		186.2
(2) 		146.8
(-0.3) 		101.6
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174372_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22443
Sequence Type Exemplar sequence
Representative Public ID C54749 NCBI
Target Description C54749_rc /REP_DB=TREMBL Accession /GB=C54749 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk398d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075971 NCBI Caenorhabditis elegans Y102A11A.3 (Y102A11A.3) mRNA, complete cds. 11/11 A 
SNAP00000043289 ENSEMBL cdna:SNAP chromosome:CEL140:X:2017641:2025289:1 11/11 None
Y102A11A.3 ENSEMBL cdna:known chromosome:CEL140:X:2019388:2025731:1 gene:Y102A11A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043298 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2024614-2025299(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.3
Entrez Gene 180514 Entrez gene
SwissProt Q95XK2 EMBL-EBI
WormBase CE31255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69073 Hypothetical protein Y102A11A.3 [Caenorhabditis elegans] ref|NP_508372.2| Y102A11A.3 [Caenorhabditis elegans] 0.0
blast CAE58919 Hypothetical protein CBG02178 [Caenorhabditis briggsae] 3.0E-32
blast CAE58919 Hypothetical protein CBG02178 [Caenorhabditis briggsae] 1.0E-28
blast CAE58920 Hypothetical protein CBG02179 [Caenorhabditis briggsae] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:174372_S_AT
atccagcgattctagcatttgtgcagaagtattcgttccgacaaactcaacaccaccttc
ggagacttcccctaccgacattagtttgaactcttcggaacagcagaacacttcttcggt
attagaagaagtctcatatttcttcacaaccgcgtgtgttgctgcacttgcattcatgtc
cccggcagaaaacgattcattattaaattcggaaatcattgaaaatgcatcaaaatatat
atccaactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGCGATTCTAGCATTTGTGCA 379 39 14 Antisense
TTGTGCAGAAGTATTCGTTCCGACA 233 709 32 Antisense
TTCGTTCCGACAAACTCAACACCAC 64 695 45 Antisense
TCCCCTACCGACATTAGTTTGAACT 201 585 81 Antisense
TAGTTTGAACTCTTCGGAACAGCAG 619 643 95 Antisense
GGAACAGCAGAACACTTCTTCGGTA 60 529 110 Antisense
AAGTCTCATATTTCTTCACAACCGC 528 157 142 Antisense
TTCACAACCGCGTGTGTTGCTGCAC 71 687 156 Antisense
CGTGTGTTGCTGCACTTGCATTCAT 509 245 166 Antisense
CATTCATGTCCCCGGCAGAAAACGA 702 215 184 Antisense
GCATCAAAATATATATCCAACTCTC 119 309 240 Antisense
Sequence Source Affymetrix Proprietary Database