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[174370_at]

Description C59658_rc /REP_DB=TREMBL Accession /GB=C59658 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439h2 : 3prime end, single read.
Cluster 6grp_total > 20      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4.5
(-3)
A 		21.2
(-0)
A 		38
(3)
A 		27.1
(1)
A 		34
B 3.1
(-3)
A 		12.2
(-1.3)
A 		8
(-2.1)
A 		35
(3)
A 		32
C 1.9
(-3)
A 		4.9
(-2.3)
A 		27.4
(3)
A 		6.8
(-1.8)
A 		26
avr 3.2
(-3) 		12.8
(-0.3) 		24.5
(3) 		23
(2.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.4
(-3)
A 		34.9
(3)
A 		4.6
(-2.4)
A 		2.1
(-2.9)
A 		3.5
(-2.6)
A 		5.8
(-2.2)
A 		34
B 2.5
(-2.9)
A 		22.9
(2.6)
A 		24.5
(3)
A 		2
(-3)
A 		3.2
(-2.7)
A 		14
(0.2)
A 		23
C 0.7
(-3)
A 		3.8
(-2.4)
A 		19.4
(0.8)
A 		30.6
(3)
A 		2.5
(-2.6)
A 		4.3
(-2.3)
A 		30
avr 1.5
(-3) 		20.5
(3) 		16.2
(1.6) 		11.6
(0.2) 		3.1
(-2.5) 		8
(-0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-3)
A 		4.6
(-0.8)
A 		9.9
(3)
A 		4
(-1.3)
A 		8
B 1
(-3)
A 		3
(-1.2)
A 		1.9
(-2.2)
A 		7.5
(3)
A 		7
C 0.6
(-3)
A 		1.4
(-2.5)
A 		9.6
(3)
A 		1.2
(-2.6)
A 		9
avr 1.1
(-3) 		3
(-1.1) 		7.1
(3) 		4.2
(0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.3
(-3)
A 		12.4
(3)
A 		1
(-2.7)
A 		0.5
(-2.9)
A 		1
(-2.7)
A 		1.4
(-2.5)
A 		12
B 0.9
(-2.7)
A 		7.6
(3)
A 		5.9
(1.6)
A 		0.5
(-3)
A 		1.3
(-2.3)
A 		5.2
(1)
A 		7
C 0.3
(-3)
A 		1.2
(-2.1)
A 		4.9
(1.7)
A 		6.2
(3)
A 		0.8
(-2.5)
A 		1.4
(-1.9)
A 		6
avr 0.5
(-3) 		7.1
(3) 		3.9
(0.1) 		2.4
(-1.3) 		1
(-2.5) 		2.7
(-1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21685
Sequence Type Exemplar sequence
Representative Public ID C59658 NCBI
Target Description C59658_rc /REP_DB=TREMBL Accession /GB=C59658 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59658
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59658 C59658_rc /REP_DB=TREMBL Accession /GB=C59658 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439h2 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028510 11/11 Negative Strand Matching Probes None
NM_001028509 11/11 Negative Strand Matching Probes None
SNAP00000018575 10/11 Negative Strand Matching Probes None
GENEFINDER00000018582 10/11 Negative Strand Matching Probes None
C26F1.1b 11/11 Negative Strand Matching Probes None
C26F1.1a 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7790001-7790234(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174370_AT
tatacattacatattgcattaacaacaattagttcttgaactttcggaggcgacgagcac
ttggagcaactccggcggcttcgaaggcagcggacgaggcgactgattgtacaaggccgg
caggttgagatccggagaaagaggaatcagctccgtaattggatgatccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACATTACATATTGCATTAACAA 686 659 18 Antisense
TAGTTCTTGAACTTTCGGAGGCGAC 3 653 47 Antisense
GAACTTTCGGAGGCGACGAGCACTT 678 349 55 Antisense
ACGAGCACTTGGAGCAACTCCGGCG 646 91 70 Antisense
TCCGGCGGCTTCGAAGGCAGCGGAC 495 591 88 Antisense
AAGGCAGCGGACGAGGCGACTGATT 64 161 101 Antisense
GCGGACGAGGCGACTGATTGTACAA 214 291 107 Antisense
GCGACTGATTGTACAAGGCCGGCAG 169 289 116 Antisense
GTACAAGGCCGGCAGGTTGAGATCC 302 461 126 Antisense
AAGAGGAATCAGCTCCGTAATTGGA 124 153 156 Antisense
CAGCTCCGTAATTGGATGATCCAGA 361 203 165 Antisense
Sequence Source Affymetrix Proprietary Database