[Home] | [Total List]

[174369_at]

Description C35110_rc /REP_DB=TREMBL Accession /GB=C35110 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 68      6grp_total > 76      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1344
1 2 3 4 range
A 2842.9
(3)
P 		1608.1
(-2.5)
P 		1499.2
(-3)
P 		2069.5
(-0.5)
P 		1344
B 1991.8
(-3)
P 		2058.5
(-2.3)
P 		2574.6
(3)
P 		2184.9
(-1)
P 		583
C 2479.5
(3)
P 		2006.8
(-1.6)
P 		1865.2
(-3)
P 		1887.1
(-2.8)
P 		614
avr 2438.1
(3) 		1891.1
(-3) 		1979.7
(-2) 		2047.2
(-1.3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1601
1 2 3 4 5 6 range
A 2090.3
(-1.3)
P 		1977.8
(-2)
P 		2495.4
(1.3)
P 		1825.7
(-3)
P 		2752.6
(3)
P 		2652
(2.3)
P 		927
B 1907.3
(-2.7)
P 		2118
(-1.7)
P 		1835.1
(-3)
P 		2753.3
(1.2)
P 		2060.3
(-2)
P 		3148.4
(3)
P 		1313
C 1547
(-3)
P 		2007.6
(0.2)
P 		1899.3
(-0.5)
P 		2219.3
(1.7)
P 		1696.9
(-2)
P 		2409.3
(3)
P 		862
avr 1848.2
(-3) 		2034.5
(-1.7) 		2076.6
(-1.5) 		2266.1
(-0.2) 		2169.9
(-0.8) 		2736.6
(3) 		888
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 732
1 2 3 4 range
A 1035.1
(3)
P 		349.1
(-2.6)
P 		391.9
(-2.3)
P 		302.9
(-3)
P 		732
B 635.2
(3)
P 		508.4
(-1.5)
P 		596.6
(1.6)
P 		465.6
(-3)
P 		170
C 820.8
(3)
P 		577
(0.1)
P 		650.1
(1)
P 		318.2
(-3)
P 		503
avr 830.4
(3) 		478.2
(-1.5) 		546.2
(-0.6) 		362.2
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 789
1 2 3 4 5 6 range
A 385.3
(-3)
P 		703.4
(1.3)
P 		543.4
(-0.9)
P 		463
(-2)
P 		830.6
(3)
P 		645.7
(0.5)
P 		445
B 663.7
(-1.2)
P 		705
(-0.9)
P 		445.6
(-3)
P 		729.3
(-0.7)
P 		837.1
(0.2)
P 		1174
(3)
P 		728
C 573.4
(-0.9)
P 		612.6
(-0.2)
P 		483.4
(-2.4)
P 		446.3
(-3)
P 		549.1
(-1.3)
P 		806.5
(3)
P 		360
avr 540.8
(-2.2) 		673.7
(-0.1) 		490.8
(-3) 		546.2
(-2.1) 		738.9
(0.9) 		875.4
(3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21708
Sequence Type Exemplar sequence
Representative Public ID C35110 NCBI
Target Description C35110_rc /REP_DB=TREMBL Accession /GB=C35110 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028735 NCBI Caenorhabditis elegans F40F9.7a (F40F9.7) mRNA, complete cds. 11/11 None
F40F9.7a.3 ENSEMBL cdna:known chromosome:CEL140:V:9734535:9736600:1 gene:F40F9.7 11/11 None
F40F9.7a.2 ENSEMBL cdna:known chromosome:CEL140:V:9734536:9736600:1 gene:F40F9.7 11/11 None
F40F9.7a.1 ENSEMBL cdna:known chromosome:CEL140:V:9734541:9736600:1 gene:F40F9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179365 2 1 NM_001028735 174369_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9736242-9736529(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40F9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94762 Hypothetical protein F40F9.7a [Caenorhabditis elegans] ref|NP_001023906.1| F40F9.7a [Caenorhabditis elegans] 1.0E-153
blast CAD82914 Hypothetical protein F40F9.7b [Caenorhabditis elegans] ref|NP_001023907.1| F40F9.7b [Caenorhabditis elegans] 1.0E-137
blast CAE72242 Hypothetical protein CBG19360 [Caenorhabditis briggsae] 3.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003958 EMBL-EBI Transcription factor CBF/NF-Y/archaeal histone 2.5E-22
Sequence
Target Sequence 
>C. ELEGANS:174369_AT
ttctgatctaaatttctccttttctattgctccaagttaagaaaaaaaaaacaaatcctc
accgggtctaccctattctctatttctcttgttttattcattttttgtcgttcactggca
aatcaaaatttaatcacttcgatgttctcccaatatgaaccattaccgacccacaccttc
ataaatcaggatgctcgtcgcttttcattaaaccttccaaatgttctctgtcatatgttt
aacttgttttgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGATCTAAATTTCTCCTTTTCT 680 693 15 Antisense
TCTCCTTTTCTATTGCTCCAAGTTA 137 611 29 Antisense
ATTCTCTATTTCTCTTGTTTTATTC 277 11 89 Antisense
ATTCATTTTTTGTCGTTCACTGGCA 463 11 110 Antisense
TAATCACTTCGATGTTCTCCCAATA 333 635 145 Antisense
CAATATGAACCATTACCGACCCACA 456 179 165 Antisense
CCGACCCACACCTTCATAAATCAGG 313 263 180 Antisense
ATAAATCAGGATGCTCGTCGCTTTT 281 25 195 Antisense
ATGCTCGTCGCTTTTCATTAAACCT 268 43 205 Antisense
AACCTTCCAAATGTTCTCTGTCATA 583 147 225 Antisense
GTCATATGTTTAACTTGTTTTGCTC 567 467 244 Antisense
Sequence Source Affymetrix Proprietary Database