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[174368_at]

Description C53336_rc /REP_DB=TREMBL Accession /GB=C53336 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297c7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 19      6grp_total > 08      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 110.2
(3)
P 		109.4
(2.8)
A 		86.5
(-3)
P 		87.7
(-2.7)
A 		24
B 140.9
(3)
P 		118.1
(0.1)
P 		93.9
(-3)
P 		112.3
(-0.7)
P 		47
C 78.7
(-3)
P 		98.9
(-0.1)
P 		91.4
(-1.2)
P 		120.2
(3)
P 		42
avr 109.9
(3) 		108.8
(2.7) 		90.6
(-3) 		106.7
(2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 216
(0.9)
P 		260.2
(2.2)
P 		135.5
(-1.5)
P 		286
(3)
P 		84.8
(-3)
P 		118.2
(-2)
P 		201
B 175.6
(3)
P 		102
(-1.5)
P 		129.5
(0.2)
P 		112.6
(-0.8)
A 		76.8
(-3)
P 		82.6
(-2.6)
P 		99
C 312.6
(3)
P 		122.7
(-2.8)
P 		201.7
(-0.4)
P 		160.7
(-1.6)
P 		132.5
(-2.5)
P 		115.6
(-3)
P 		197
avr 234.7
(3) 		161.6
(-0.2) 		155.6
(-0.5) 		186.4
(0.9) 		98
(-3) 		105.5
(-2.7) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 40.1
(3)
P 		23.8
(-0.6)
A 		22.6
(-0.8)
P 		12.8
(-3)
A 		27
B 44.9
(3)
P 		29.2
(-1.1)
P 		21.7
(-3)
P 		23.9
(-2.4)
P 		23
C 26
(-0)
P 		28.4
(1.2)
P 		31.8
(3)
P 		20.3
(-3)
P 		12
avr 37
(3) 		27.1
(-0.3) 		25.4
(-0.9) 		19
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 39.8
(-1.7)
P 		92.5
(3)
P 		29.5
(-2.7)
P 		72.5
(1.2)
P 		25.6
(-3)
P 		28.8
(-2.7)
P 		67
B 61.1
(3)
P 		33.9
(-2.2)
P 		31.4
(-2.7)
P 		29.8
(-3)
A 		31.2
(-2.7)
P 		30.8
(-2.8)
P 		31
C 115.9
(3)
P 		37.4
(-2.6)
P 		51.3
(-1.6)
P 		32.3
(-3)
P 		42.9
(-2.2)
P 		38.7
(-2.5)
P 		84
avr 72.3
(3) 		54.6
(0.3) 		37.4
(-2.3) 		44.9
(-1.2) 		33.2
(-2.9) 		32.8
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22126
Sequence Type Exemplar sequence
Representative Public ID C53336 NCBI
Target Description C53336_rc /REP_DB=TREMBL Accession /GB=C53336 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076619 NCBI Caenorhabditis elegans C15H9.5 (C15H9.5) mRNA, complete cds. 11/11 None
C15H9.5.1 ENSEMBL cdna:known chromosome:CEL140:X:6093244:6097522:1 gene:C15H9.5 11/11 None
C15H9.5.2 ENSEMBL cdna:known chromosome:CEL140:X:6093258:6097522:1 gene:C15H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6097173-6097461(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.5
Entrez Gene 180881 Entrez gene
SwissProt Q18024 EMBL-EBI
WormBase CE35402 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249229_AT expressed protein at
CANINE:1584152_AT similar to G protein-coupled receptor 108 cfa
CANINE_2:CFA.11827.1.A1_AT similar to G protein-coupled receptor 108 cfa
CANINE_2:CFAAFFX.28459.1.S1_S_AT similar to G protein-coupled receptor 108 cfa
DROSGENOME1:144742_AT dm
DROSOPHILA_2:1632894_AT dm
HU35KSUBD:RC_W88995_AT G protein-coupled receptor 108 hs
U133_X3P:HS.167641.0.S1_3P_AT G protein-coupled receptor 108 hs
HG-U133_PLUS_2:225058_AT G protein-coupled receptor 108 hs
HG-U133B:225058_AT G protein-coupled receptor 108 hs
HG-U95B:54694_AT G protein-coupled receptor 108 hs
MOE430A:1426078_A_AT G protein-coupled receptor 108 mm
MOUSE430A_2:1426078_A_AT G protein-coupled receptor 108 mm
MOUSE430_2:1426078_A_AT G protein-coupled receptor 108 mm
MG-U74BV2:162729_AT G protein-coupled receptor 108 mm
RG-U34C:H33832_I_AT G protein-coupled receptor 108 rn
RG-U34C:H33832_F_AT G protein-coupled receptor 108 rn
RG-U34C:RC_AI179089_AT G protein-coupled receptor 108 rn
RG-U34C:RC_AI136630_S_AT G protein-coupled receptor 108 rn
RAE230A:1389188_AT G protein-coupled receptor 108 rn
RAT230_2:1389188_AT G protein-coupled receptor 108 rn
Protein Similarities
Method ID Description E-Value
blast AAB52667 Hypothetical protein C15H9.5 [Caenorhabditis elegans] ref|NP_509020.2| C15H9.5 [Caenorhabditis elegans] 0.0
blast CAE68867 Hypothetical protein CBG14830 [Caenorhabditis briggsae] 0.0
blast AAM18888 unknown [Branchiostoma floridae] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR009637 EMBL-EBI Lung seven transmembrane receptor 5.1E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509020.2 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
C15H9.5.1 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
C15H9.5.2 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
Sequence
Target Sequence 
>C. ELEGANS:174368_AT
ttgcaatatcaatcattccttagaaaatattatcatcattatctaaaaacttcaagatgt
atgaactaaattttttcaaacatataggtgaaagtacactggccaaagtgtataaattct
agtctccgcctccttttccccatctctaatcttttttagttgtaacatttagtccaataa
atttccagtcgtgtgatgtgataactcgagactccctgtaaaaaaatattgttaattatt
tttcattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAATATCAATCATTCCTTAGAA 83 705 21 Antisense
GAAAATATTATCATCATTATCTAAA 487 353 43 Antisense
ATAGGTGAAAGTACACTGGCCAAAG 314 21 104 Antisense
AGTGTATAAATTCTAGTCTCCGCCT 641 59 127 Antisense
TTTCCCCATCTCTAATCTTTTTTAG 75 671 155 Antisense
TTAGTTGTAACATTTAGTCCAATAA 323 681 176 Antisense
AGTCCAATAAATTTCCAGTCGTGTG 9 61 191 Antisense
AAATTTCCAGTCGTGTGATGTGATA 640 115 199 Antisense
GTGATGTGATAACTCGAGACTCCCT 611 483 213 Antisense
TGATAACTCGAGACTCCCTGTAAAA 341 563 219 Antisense
ATATTGTTAATTATTTTTCATTCTA 218 19 246 Antisense
Sequence Source Affymetrix Proprietary Database