[Home] | [Total List]

[174367_at]

Description C37418_rc /REP_DB=TREMBL Accession /GB=C37418 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk473e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 74      6grp_total > 49      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1316
1 2 3 4 range
A 842.9
(-1.3)
P 		1208.6
(0.5)
P 		1708.2
(3)
P 		505.4
(-3)
P 		1203
B 860.9
(-0.5)
P 		1304
(1.9)
P 		1519.7
(3)
P 		391.8
(-3)
P 		1128
C 827.5
(-0.7)
P 		1421.5
(2.5)
P 		1509.7
(3)
P 		406.1
(-3)
P 		1104
avr 843.8
(-0.9) 		1311.4
(1.6) 		1579.2
(3) 		434.4
(-3) 		1145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 818.6
(3)
P 		617.6
(-2)
P 		714.3
(0.4)
P 		575.8
(-3)
P 		763.6
(1.6)
P 		737.3
(1)
P 		243
B 763
(0.3)
P 		832.6
(1.7)
P 		607
(-3)
P 		767.9
(0.4)
P 		774.2
(0.5)
P 		893
(3)
P 		286
C 711
(1)
P 		682.4
(0.3)
P 		540.3
(-3)
P 		685.9
(0.4)
P 		666.2
(-0.1)
P 		799.1
(3)
P 		259
avr 764.2
(1.6) 		710.9
(-0.1) 		620.5
(-3) 		676.5
(-1.2) 		734.7
(0.6) 		809.8
(3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 306.9
(0.8)
P 		262.4
(0)
P 		446.6
(3)
P 		74
(-3)
P 		373
B 274.5
(1.3)
P 		322.1
(2.3)
P 		352.2
(3)
P 		83.5
(-3)
P 		269
C 273.9
(-0.3)
P 		408.7
(1.5)
P 		526.2
(3)
P 		68.5
(-3)
P 		458
avr 285.1
(0.4) 		331.1
(1.2) 		441.7
(3) 		75.3
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 150.9
(-2.7)
P 		219.7
(2.2)
P 		155.6
(-2.3)
P 		146
(-3)
P 		230.4
(3)
P 		179.5
(-0.6)
P 		84
B 265.5
(0.8)
P 		277.1
(1.2)
P 		147.4
(-3)
P 		203.4
(-1.2)
P 		314.5
(2.4)
P 		333
(3)
P 		186
C 263.5
(2.8)
P 		208.2
(0.3)
P 		137.5
(-3)
P 		137.9
(-3)
P 		215.6
(0.6)
P 		267.5
(3)
P 		130
avr 226.6
(1.2) 		235
(1.7) 		146.8
(-3) 		162.4
(-2.2) 		253.5
(2.7) 		260
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20891
Sequence Type Exemplar sequence
Representative Public ID C37418 NCBI
Target Description C37418_rc /REP_DB=TREMBL Accession /GB=C37418 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk473e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067092 NCBI Caenorhabditis elegans Y66D12A.9 (Y66D12A.9) mRNA, complete cds. 11/11 None
Y66D12A.9 ENSEMBL cdna:known chromosome:CEL140:III:11568009:11573154:1 gene:Y66D12A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020817 3/11 Cross Hyb Matching Probes None
GENEFINDER00000020834 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11571407-11573140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.9
Entrez Gene 176588 Entrez gene
SwissProt Q95PZ7 EMBL-EBI
WormBase CE28807 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584150_AT similar to proteaseome (prosome, macropain) 28 subunit, 3 (predicted) cfa
CANINE_2:CFA.7938.1.A1_S_AT similar to proteaseome (prosome, macropain) 28 subunit, 3 (predicted) cfa
DROSOPHILA_2:1625849_AT Actin 5C promoter construct of Masson dm
DROSGENOME1:155140_AT Actin 5C promoter construct of Masson dm
CHICKEN:GGA.5999.1.S1_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) gga
CHICKEN:GGA.5999.2.S1_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) gga
CHICKEN:GGA.5999.3.S1_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) gga
HG-U133_PLUS_2:200988_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A:200988_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A_2:200988_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-FOCUS:200988_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A:209853_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133_PLUS_2:209853_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A_2:209853_S_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133_PLUS_2:209852_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A:209852_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A_2:209852_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBA:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBB:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBC:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBD:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HUGENEFL:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HC-G110:HUM_ALU_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBA:U11292_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HUGENEFL:U11292_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133_PLUS_2:200987_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A_2:200987_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U133A:200987_X_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
U133_X3P:G5031996_3P_A_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
U133_X3P:G12803696_3P_A_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
U133_X3P:G12655138_3P_A_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
U133_X3P:HS.152978.0.A1_3P_A_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HG-U95AV2:39796_AT proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
HU35KSUBC:RC_D25729_AT Proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) hs
MU11KSUBA:D87911_S_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MU11KSUBB:MSA.3275.0_S_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MG-U74AV2:93803_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOE430A:1418078_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOUSE430A_2:1418078_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOUSE430_2:1418078_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOE430A:1418079_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOUSE430A_2:1418079_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOUSE430_2:1418079_AT proteaseome (prosome, macropain) 28 subunit, 3 mm
MOE430A:1438509_AT Proteaseome (prosome, macropain) 28 subunit, 3, mRNA (cDNA clone MGC:18383 IMAGE:4221225) mm
MOUSE430A_2:1438509_AT Proteaseome (prosome, macropain) 28 subunit, 3, mRNA (cDNA clone MGC:18383 IMAGE:4221225) mm
MOUSE430_2:1438509_AT Proteaseome (prosome, macropain) 28 subunit, 3, mRNA (cDNA clone MGC:18383 IMAGE:4221225) mm
MU19KSUBB:TC30715_S_AT Proteaseome (prosome, macropain) 28 subunit, 3, mRNA (cDNA clone MGC:18383 IMAGE:4221225) mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
8537 proteasome activator complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8538 proteasome activator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC70141 Hypothetical protein Y66D12A.9 [Caenorhabditis elegans] ref|NP_499493.1| Y66D12A.9 [Caenorhabditis elegans] 1.0E-138
blast CAE67692 Hypothetical protein CBG13260 [Caenorhabditis briggsae] 1.0E-123
blast NP_035322 proteasome activator subunit 3 [Mus musculus] ref|NP_005780.2| proteasome activator subunit 3 isoform 1 [Homo sapiens] ref|XP_592707.2| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit, 3 (predicted) isoform 1 [Bos taurus] gb|AAV38193.1| proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) [Homo sapiens] emb|CAJ18406.1| Psme3 [Mus musculus] gb|AAH01423.1| Proteasome activator subunit 3, isoform 1 [Homo sapiens] gb|AAH15255.1| Proteasome activator subunit 3 [Mus musculus] gb|AAH08020.1| Proteasome activator subunit 3, isoform 1 [Homo sapiens] ref|XP_857850.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit, 3 (predicted) isoform 6 [Canis familiaris] ref|XP_857689.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit, 3 (predicted) isoform 3 [Canis familiaris] gb|AAN85724.1| proteasome activator subunit 3 [Sus scrofa] dbj|BAE24425.1| unnamed protein product [Mus musculus] dbj|BAE29974.1| unnamed protein product [Mus musculus] dbj|BAE33577.1| unnamed protein product [Mus musculus] dbj|BAE42405.1| unnamed protein product [Mus musculus] dbj|BAE01872.1| unnamed protein product [Macaca fascicularis] ref|NP_001011894.1| proteaseome (prosome, macropain) 28 subunit, 3 (predicted) [Rattus norvegicus] ref|NP_999513.1| proteasome activator subunit 3 [Sus scrofa] dbj|BAA28838.1| PA28 gamma subunit [Mus musculus] sp|P61291|PSME3_PIG Proteasome activator complex subunit 3 (Proteasome activator 28-gamma subunit) (PA28gamma) (PA28g) (Activator of multicatalytic protease subunit 3) gb|AAH02684.1| Proteasome activator subunit 3, isoform 1 [Homo sapiens] gb|AAH89889.1| Proteaseome (prosome, macropain) 28 subunit, 3 (predicted) [Rattus norvegicus] sp|P61290|PSME3_MOUSE Proteasome activator complex subunit 3 (Proteasome activator 28-gamma subunit) (PA28gamma) (PA28g) (Activator of multicatalytic protease subunit 3) (11S regulator complex gamma subunit) (REG-gamma) (Ki nuclear autoantigen) sp|P61289|PSME3_HUMAN Proteasome activator complex subunit 3 (Proteasome activator 28-gamma subunit) (PA28gamma) (PA28g) (Activator of multicatalytic protease subunit 3) (11S regulator complex gamma subunit) (REG-gamma) (Ki nuclear autoantigen) dbj|BAA22041.1| Ki antigen [Mus musculus] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003186 EMBL-EBI Proteasome activator pa28, beta subunit 6.3E-87
Pfam IPR003185 EMBL-EBI Proteasome activator pa28, alpha subunit 1.7E-10
Sequence
Target Sequence 
>C. ELEGANS:174367_AT
atcacgaagattgctaaatatccacatgtggatgattatagacgtgctattcttgatatg
gacgagaaacagttcattaatattagattggtggttctcgagatgcgcaatcacttctcc
acacttcacgatatgattatgaagaactatgagaagatcaaggttccacgcacctccaac
accgaacatctttattaaggaattgaatccatcatcctgttttaatgtttgcttcggtct
caaattttacccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGAAGATTGCTAAATATCCAC 17 29 14 Antisense
ACATGTGGATGATTATAGACGTGCT 282 107 37 Antisense
TTATAGACGTGCTATTCTTGATATG 598 679 49 Antisense
GATTGGTGGTTCTCGAGATGCGCAA 53 435 99 Antisense
TCGAGATGCGCAATCACTTCTCCAC 122 603 111 Antisense
ACTTCTCCACACTTCACGATATGAT 689 103 126 Antisense
AGAAGATCAAGGTTCCACGCACCTC 263 75 165 Antisense
TCCAACACCGAACATCTTTATTAAG 702 587 188 Antisense
GAATTGAATCCATCATCCTGTTTTA 359 323 213 Antisense
CTGTTTTAATGTTTGCTTCGGTCTC 481 239 230 Antisense
GCTTCGGTCTCAAATTTTACCCAAT 684 297 244 Antisense
Sequence Source Affymetrix Proprietary Database