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[174366_s_at]

Description C33009_rc /REP_DB=TREMBL Accession /GB=C33009 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk338e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_high_8_8 > 41      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 482.7
(3)
P 		379
(-0.2)
P 		357.5
(-0.9)
P 		291
(-3)
P 		192
B 610.3
(3)
P 		319
(-1.6)
P 		387.5
(-0.5)
P 		228
(-3)
P 		382
C 524.2
(3)
P 		487.1
(2.2)
P 		271.3
(-2.5)
P 		248.7
(-3)
A 		276
avr 539.1
(3) 		395
(-0.1) 		338.8
(-1.2) 		255.9
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 519
(0.6)
P 		664.2
(3)
P 		361.6
(-2)
P 		431.8
(-0.9)
P 		493.5
(0.2)
P 		302.5
(-3)
P 		362
B 642.1
(3)
P 		497.3
(0.6)
P 		324.8
(-2.2)
P 		398.1
(-1)
P 		441.2
(-0.3)
P 		275
(-3)
P 		367
C 571.5
(3)
P 		413.6
(-0.3)
P 		310.7
(-2.5)
P 		527
(2.1)
P 		317.1
(-2.4)
P 		287.4
(-3)
P 		284
avr 577.5
(3) 		525
(1.9) 		332.4
(-2.1) 		452.3
(0.4) 		417.3
(-0.3) 		288.3
(-3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 175.7
(3)
P 		82.3
(-1.2)
P 		93.5
(-0.7)
P 		42.6
(-3)
P 		133
B 194.6
(3)
P 		78.8
(-1.8)
P 		89.8
(-1.3)
P 		48.6
(-3)
P 		146
C 173.5
(3)
P 		140
(1.5)
P 		94.6
(-0.6)
P 		41.9
(-3)
A 		132
avr 181.3
(3) 		100.4
(-0.5) 		92.6
(-0.9) 		44.4
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 95.7
(-2.2)
P 		236.2
(3)
P 		78.8
(-2.8)
P 		109.5
(-1.7)
P 		148.9
(-0.2)
P 		73.6
(-3)
P 		163
B 223.4
(3)
P 		165.5
(0.6)
P 		78.9
(-3)
P 		105.5
(-1.9)
P 		179.3
(1.2)
P 		102.6
(-2)
P 		145
C 211.8
(3)
P 		126.2
(-0.9)
P 		79.1
(-3)
P 		106
(-1.8)
P 		102.6
(-1.9)
P 		96.2
(-2.2)
P 		133
avr 177
(3) 		176
(2.9) 		78.9
(-3) 		107
(-1.3) 		143.6
(1) 		90.8
(-2.3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174366_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21638
Sequence Type Exemplar sequence
Representative Public ID C33009 NCBI
Target Description C33009_rc /REP_DB=TREMBL Accession /GB=C33009 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk338e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171250(11), NM_171897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171250 NCBI Caenorhabditis elegans Y55F3C.7a (Y55F3C.7) mRNA, complete cds. 11/11 None
NM_171897 NCBI Caenorhabditis elegans Y55F3C.7b (Y55F3C.7) mRNA, complete cds. 11/11 None
SNAP00000014997 ENSEMBL cdna:SNAP chromosome:CEL140:IV:698808:703732:-1 10/11 None
GENEFINDER00000015015 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:698808:701670:-1 10/11 None
Y55F3C.7a ENSEMBL cdna:known chromosome:CEL140:IV:698761:707719:-1 gene:Y55F3C.7 11/11 None
Y55F3C.7b ENSEMBL cdna:known chromosome:CEL140:IV:698774:707709:-1 gene:Y55F3C.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:698776-699336(-) 98.93 98.93
Public Domain and Genome References
Ensembl Y55F3C.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63421 Hypothetical protein Y55F3C.7a [Caenorhabditis elegans] ref|NP_741298.2| Y55F3C.7a [Caenorhabditis elegans] 0.0
blast AAN63422 Hypothetical protein Y55F3C.7b [Caenorhabditis elegans] ref|NP_741299.2| Y55F3C.7b [Caenorhabditis elegans] 0.0
blast CAE65649 Hypothetical protein CBG10707 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.3E-6
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.3E-6
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741298.2 1 340-362
NP_741299.2 1 340-362
Y55F3C.7a 1 340-362
Y55F3C.7b 1 340-362
SNAP00000014997 1 358-380
GENEFINDER00000015015 1 345-367
Sequence
Target Sequence 
>C. ELEGANS:174366_S_AT
gtcgagttatccctattactgtagcatccgagtacggggttcctgcatcgaggaactctg
atgcatcatcagaaggcagaagcagcaacgagatttatagacggccgaaccaaatcgctc
tgacccgcccagaagctcgtcacagtaactccacgttcatgacccattcgacgacaatgg
agacggatttggatagtcaagcatcaaaccaggccacatcctatcattgaaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGTTATCCCTATTACTGTAGC 343 473 26 Antisense
ATCCCTATTACTGTAGCATCCGAGT 173 39 34 Antisense
TAGCATCCGAGTACGGGGTTCCTGC 584 623 47 Antisense
GGGGTTCCTGCATCGAGGAACTCTG 43 497 61 Antisense
ATCGAGGAACTCTGATGCATCATCA 645 35 72 Antisense
CGTCACAGTAACTCCACGTTCATGA 140 245 163 Antisense
CGTTCATGACCCATTCGACGACAAT 135 247 179 Antisense
ATTCGACGACAATGGAGACGGATTT 215 7 191 Antisense
GACGGATTTGGATAGTCAAGCATCA 424 377 207 Antisense
GTCAAGCATCAAACCAGGCCACATC 283 463 221 Antisense
AGGCCACATCCTATCATTGAAATTT 635 53 236 Antisense
Sequence Source Affymetrix Proprietary Database