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[174363_at]

Description C52041_rc /REP_DB=TREMBL Accession /GB=C52041 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g3 : 3prime end, single read.
Cluster 6grp_total > 35      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 33.5
(0.7)
A 		6.8
(-2.6)
A 		3.5
(-3)
A 		51.8
(3)
A 		48
B 49
(0.2)
A 		24.3
(-1.7)
A 		6.8
(-3)
A 		86.5
(3)
A 		80
C 47.8
(0.8)
A 		47.8
(0.8)
A 		9.3
(-3)
A 		69.8
(3)
A 		61
avr 43.4
(0.5) 		26.3
(-1.1) 		6.5
(-3) 		69.4
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 36.9
(2.4)
A 		27.6
(0.7)
A 		40.2
(3)
A 		22.7
(-0.1)
A 		10.8
(-2.3)
A 		6.8
(-3)
A 		33
B 25.9
(2.3)
A 		13
(-0.6)
A 		29.1
(3)
A 		2.3
(-3)
A 		17.3
(0.4)
A 		24.9
(2.1)
A 		27
C 69.3
(3)
A 		54.3
(1.7)
A 		33.2
(-0.2)
A 		3.9
(-2.9)
A 		2.5
(-3)
A 		39
(0.3)
A 		67
avr 44
(3) 		31.6
(0.8) 		34.2
(1.3) 		9.6
(-3) 		10.2
(-2.9) 		23.6
(-0.6) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.2
(3)
A 		1.5
(-2.7)
A 		0.9
(-3)
A 		7.6
(0.6)
A 		11
B 15.6
(2)
A 		6
(-1.4)
A 		1.6
(-3)
A 		18.4
(3)
A 		17
C 15.8
(3)
A 		13.7
(2)
A 		3.2
(-3)
A 		11.8
(1.1)
A 		13
avr 14.5
(3) 		7.1
(-0.5) 		1.9
(-3) 		12.6
(2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.8
(0.8)
A 		9.8
(3)
A 		8.8
(2.3)
A 		5.7
(-0)
A 		3.3
(-1.8)
A 		1.7
(-3)
A 		8
B 9
(2.8)
A 		4.3
(-0.4)
A 		7.1
(1.5)
A 		0.6
(-3)
A 		7
(1.4)
A 		9.3
(3)
A 		9
C 25.7
(3)
A 		16.6
(0.8)
A 		8.5
(-1.1)
A 		0.8
(-3)
A 		0.8
(-3)
A 		13
(-0.1)
A 		25
avr 13.8
(3) 		10.2
(1.1) 		8.1
(-0) 		2.4
(-3) 		3.7
(-2.3) 		8
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21758
Sequence Type Exemplar sequence
Representative Public ID C52041 NCBI
Target Description C52041_rc /REP_DB=TREMBL Accession /GB=C52041 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C52041
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52041 C52041_rc /REP_DB=TREMBL Accession /GB=C52041 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10337601-10337881(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174363_AT
ataatcacatttaaatcttttcaattcatttattttaattggtttctctttctttccaaa
aggtccacataaatcagtggtcgatgaaatcgtcagaagcgaccggcacttctaaaatgg
tgtcgttttagtgtcctttcatcgcctgaccaacctatcaaacggggaggtctcgtctgt
gttgaagccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATCACATTTAAATCTTTTCAAT 526 25 51 Antisense
TCATTTATTTTAATTGGTTTCTCTT 370 619 76 Antisense
TCTTTCTTTCCAAAAGGTCCACATA 677 613 97 Antisense
AGGTCCACATAAATCAGTGGTCGAT 397 55 111 Antisense
GAAATCGTCAGAAGCGACCGGCACT 242 363 136 Antisense
GACCGGCACTTCTAAAATGGTGTCG 121 383 151 Antisense
ATGGTGTCGTTTTAGTGTCCTTTCA 684 49 167 Antisense
TGTCGTTTTAGTGTCCTTTCATCGC 536 555 171 Antisense
GCCTGACCAACCTATCAAACGGGGA 710 193 194 Antisense
CAAACGGGGAGGTCTCGTCTGTGTT 506 191 209 Antisense
GGTCTCGTCTGTGTTGAAGCCAAAT 17 503 219 Antisense
Sequence Source Affymetrix Proprietary Database