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[174362_at]

Description C53280_rc /REP_DB=TREMBL Accession /GB=C53280 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk296c8 : 3prime end, single read.
Cluster 6grp_total > 44      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 17.7
(0.6)
A 		28.9
(3)
A 		0.9
(-3)
A 		16.3
(0.3)
A 		28
B 25
(3)
A 		13.7
(-1.5)
A 		10
(-3)
A 		14.5
(-1.2)
A 		15
C 26.5
(3)
A 		2.5
(-3)
A 		13.4
(-0.3)
A 		13.2
(-0.3)
A 		24
avr 23.1
(3) 		15
(-0.2) 		8.1
(-3) 		14.7
(-0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 30
(2.8)
A 		15
(-0.8)
A 		30.7
(3)
A 		5.7
(-3)
A 		27
(2.1)
A 		22.2
(1)
A 		25
B 18.4
(0.5)
A 		4
(-2.8)
A 		29.6
(3)
A 		2.9
(-3)
A 		9
(-1.6)
A 		17.2
(0.2)
M 		27
C 10.3
(-0.4)
A 		16
(1.8)
M 		11.7
(0.1)
A 		17
(2.1)
A 		3.4
(-3)
A 		19.3
(3)
A 		16
avr 19.6
(1.3) 		11.7
(-1.8) 		24
(3) 		8.5
(-3) 		13.1
(-1.2) 		19.6
(1.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.4
(3)
A 		6.3
(2.9)
A 		0.2
(-3)
A 		2.4
(-0.9)
A 		6
B 8
(3)
A 		3.4
(-1.8)
A 		2.3
(-3)
A 		3.1
(-2.2)
A 		6
C 8.8
(3)
A 		0.7
(-3)
A 		4.7
(-0)
A 		2.2
(-1.9)
A 		8
avr 7.7
(3) 		3.5
(-1.8) 		2.4
(-3) 		2.6
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.5
(0.6)
A 		5.3
(0.4)
A 		6.7
(1.7)
A 		1.4
(-3)
A 		8.2
(3)
A 		5.4
(0.5)
A 		7
B 6.4
(2.3)
A 		1.3
(-2.5)
A 		7.2
(3)
A 		0.8
(-3)
A 		3.6
(-0.4)
A 		6.4
(2.3)
M 		6
C 3.8
(-0)
A 		4.9
(1.2)
M 		3
(-0.9)
A 		3.4
(-0.4)
A 		1.1
(-3)
A 		6.5
(3)
A 		5
avr 5.2
(1.7) 		3.8
(-0.3) 		5.6
(2.3) 		1.9
(-3) 		4.3
(0.4) 		6.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20647
Sequence Type Exemplar sequence
Representative Public ID C53280 NCBI
Target Description C53280_rc /REP_DB=TREMBL Accession /GB=C53280 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk296c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53280
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53280 C53280_rc /REP_DB=TREMBL Accession /GB=C53280 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk296c8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13053872-13054152(+) 16.79 100.0
Sequence
Target Sequence 
>C. ELEGANS:174362_AT
aacattttttgatctacatacagtcaaagcctgtaaattttcaactgtccaaaaatggca
atgactcagtttttgccactcataattttggaagtcgaccaaaaaagaatgcttttccta
catttttcatactgtaattttgttttaattatttatattaaaacattgtagaggtggaac
gtgcgacattgctttggatttcctcaaaagctcatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTTTTGATCTACATACAGTC 163 137 15 Antisense
TGATCTACATACAGTCAAAGCCTGT 494 565 24 Antisense
AAGCCTGTAAATTTTCAACTGTCCA 651 147 41 Antisense
TTTTCAACTGTCCAAAAATGGCAAT 624 669 52 Antisense
AAAATGGCAATGACTCAGTTTTTGC 92 133 66 Antisense
AAGAATGCTTTTCCTACATTTTTCA 683 151 119 Antisense
TTTCATACTGTAATTTTGTTTTAAT 264 673 139 Antisense
ACATTGTAGAGGTGGAACGTGCGAC 483 103 177 Antisense
GAGGTGGAACGTGCGACATTGCTTT 4 401 185 Antisense
TGCGACATTGCTTTGGATTTCCTCA 12 585 196 Antisense
GGATTTCCTCAAAAGCTCATTTTTT 301 509 210 Antisense
Sequence Source Affymetrix Proprietary Database