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[174359_at]

Description C34984_rc /REP_DB=TREMBL Accession /GB=C34984 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk425a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 37      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 416.1
(3)
P 		244
(-1.1)
P 		165.3
(-3)
P 		354.1
(1.5)
P 		251
B 385.7
(3)
P 		220.8
(-1.1)
P 		142
(-3)
P 		316.2
(1.3)
P 		244
C 414.4
(3)
P 		271.5
(-1.4)
P 		220.1
(-3)
P 		297.5
(-0.6)
P 		194
avr 405.4
(3) 		245.4
(-1.2) 		175.8
(-3) 		322.6
(0.8) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 221.2
(3)
P 		196.9
(1.4)
P 		128.7
(-3)
P 		151.2
(-1.5)
P 		144.5
(-2)
P 		189.6
(1)
P 		93
B 188.7
(1.2)
P 		224.4
(3)
P 		107.7
(-3)
P 		143
(-1.2)
P 		128.8
(-1.9)
P 		176.7
(0.5)
P 		117
C 201.4
(3)
P 		170.4
(-0.6)
P 		189.6
(1.6)
P 		198.6
(2.7)
P 		149.2
(-3)
P 		175.3
(0)
P 		52
avr 203.8
(3) 		197.2
(2.4) 		142
(-2.9) 		164.3
(-0.8) 		140.8
(-3) 		180.5
(0.8) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 151.5
(3)
P 		53
(-2.5)
P 		43.2
(-3)
P 		51.8
(-2.5)
P 		108
B 123
(3)
P 		54.5
(-1.6)
P 		32.9
(-3)
P 		67.4
(-0.7)
P 		90
C 137.2
(3)
P 		78.1
(-1.1)
P 		76.7
(-1.2)
P 		50.2
(-3)
P 		87
avr 137.2
(3) 		61.9
(-2.2) 		50.9
(-3) 		56.5
(-2.6) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 40.8
(-1.2)
P 		70
(3)
P 		28
(-3)
P 		38.3
(-1.5)
P 		43.6
(-0.8)
P 		46.2
(-0.4)
P 		42
B 65.7
(1.9)
P 		74.7
(3)
P 		26.1
(-3)
P 		37.9
(-1.5)
P 		52.3
(0.2)
P 		65.9
(1.9)
P 		49
C 74.6
(3)
P 		52
(-0.9)
P 		48.2
(-1.6)
P 		39.9
(-3)
P 		48.3
(-1.5)
P 		58.7
(0.3)
P 		35
avr 60.4
(2) 		65.6
(3) 		34.1
(-3) 		38.7
(-2.1) 		48.1
(-0.3) 		56.9
(1.3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20935
Sequence Type Exemplar sequence
Representative Public ID C34984 NCBI
Target Description C34984_rc /REP_DB=TREMBL Accession /GB=C34984 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk425a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066611 NCBI Caenorhabditis elegans F02A9.4b (F02A9.4) mRNA, complete cds. 11/11 None
F02A9.4b ENSEMBL cdna:known chromosome:CEL140:III:9084269:9089281:-1 gene:F02A9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176285 2 1 NM_066611 174359_at (11), 187436_s_at (9)
NM_066612 173806_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9084274-9084554(-) 100.0 100.0
Public Domain and Genome References
Ensembl F02A9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79619 Hypothetical protein F02A9.4b [Caenorhabditis elegans] ref|NP_499012.2| F02A9.4b [Caenorhabditis elegans] sp|P34384|YLPD_CAEEL Hypothetical protein F02A9.4b in chromosome III 0.0
blast XP_787663 PREDICTED: similar to mitochondrial ribosomal protein L44 [Strongylocentrotus purpuratus] 2.0E-35
blast EAL28505 GA15248-PA [Drosophila pseudoobscura] 4.0E-34
Sequence
Target Sequence 
>C. ELEGANS:174359_AT
tccattcagttcccatcttgttaaaggaacataaattagtcacatttaaaattcaaattg
aattcataatgcatccctttcctctcttcttgttgttcccttcttccttccatctccgct
ttgctctttgtcctcccatcggctccttgataaatgatggggtcccccttggccagatgc
aaccccatttatctaagaccccgctgctggctccgtgagcacatacacaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATTCAGTTCCCATCTTGTTAAA 110 591 19 Antisense
ATTCAGTTCCCATCTTGTTAAAGGA 260 1 22 Antisense
TAAAGGAACATAAATTAGTCACATT 522 637 40 Antisense
TGAATTCATAATGCATCCCTTTCCT 498 575 77 Antisense
CTCCCATCGGCTCCTTGATAAATGA 140 235 151 Antisense
GGCTCCTTGATAAATGATGGGGTCC 484 539 159 Antisense
TAAATGATGGGGTCCCCCTTGGCCA 507 639 169 Antisense
CCAGATGCAACCCCATTTATCTAAG 658 271 191 Antisense
GATGCAACCCCATTTATCTAAGACC 459 411 194 Antisense
CTGCTGGCTCCGTGAGCACATACAC 378 237 222 Antisense
GGCTCCGTGAGCACATACACAAGAG 84 539 227 Antisense
Sequence Source Affymetrix Proprietary Database