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[174358_s_at]

Description C36068_rc /REP_DB=TREMBL Accession /GB=C36068 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk453g2 : 3prime end, single read.
Cluster 6grp_total > 56      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 123.4
(3)
P 		63.9
(-1.8)
A 		48.6
(-3)
A 		83.7
(-0.2)
A 		75
B 118.2
(3)
P 		36.8
(-1.5)
A 		10.7
(-3)
A 		54.2
(-0.6)
A 		108
C 111.5
(3)
P 		40.3
(-3)
A 		54
(-1.8)
A 		71.8
(-0.3)
P 		71
avr 117.7
(3) 		47
(-2.3) 		37.8
(-3) 		69.9
(-0.6) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 6.3
(-3)
A 		113.3
(3)
P 		67.6
(0.4)
A 		70.2
(0.6)
A 		16.4
(-2.4)
A 		107.2
(2.7)
P 		107
B 43.2
(-1.7)
A 		69.6
(0.9)
A 		50.9
(-0.9)
A 		90.6
(3)
A 		29.5
(-3)
A 		72.1
(1.2)
P 		61
C 72.7
(1.7)
A 		62.9
(0.9)
A 		16.6
(-3)
A 		48
(-0.4)
A 		88.5
(3)
A 		85.3
(2.7)
A 		72
avr 40.7
(-3) 		81.9
(2.2) 		45
(-2.5) 		69.6
(0.7) 		44.8
(-2.5) 		88.2
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 44.9
(3)
P 		13.9
(-2.7)
A 		12.7
(-2.9)
A 		12.2
(-3)
A 		33
B 37.7
(3)
P 		9.1
(-1.9)
A 		2.5
(-3)
A 		11.5
(-1.5)
A 		35
C 36.9
(3)
P 		11.6
(-3)
A 		18.8
(-1.3)
A 		12.1
(-2.9)
P 		25
avr 39.8
(3) 		11.5
(-3) 		11.3
(-3) 		11.9
(-2.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.2
(-3)
A 		40.3
(3)
P 		14.7
(-0.9)
A 		17.8
(-0.5)
A 		5
(-2.4)
A 		26.1
(0.8)
P 		39
B 15
(-1.8)
A 		23.2
(1.5)
A 		12.4
(-2.8)
A 		24
(1.8)
A 		12
(-3)
A 		26.9
(3)
P 		15
C 27
(2.6)
A 		19.2
(0.7)
A 		4.2
(-3)
A 		9.6
(-1.7)
A 		28.6
(3)
A 		28.6
(3)
A 		24
avr 14.4
(-1.6) 		27.6
(3) 		10.4
(-3) 		17.1
(-0.7) 		15.2
(-1.3) 		27.2
(2.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174358_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21639
Sequence Type Exemplar sequence
Representative Public ID C36068 NCBI
Target Description C36068_rc /REP_DB=TREMBL Accession /GB=C36068 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk453g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171318(11), NM_171319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171318 NCBI Caenorhabditis elegans Y24D9A.1a (Y24D9A.1) mRNA, complete cds. 11/11 A 
NM_171319 NCBI Caenorhabditis elegans Y24D9A.1b (Y24D9A.1) mRNA, complete cds. 11/11 None
SNAP00000027692 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4408828:4414580:1 11/11 None
GENEFINDER00000027697 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4408852:4413486:1 11/11 None
Y24D9A.1a ENSEMBL cdna:known chromosome:CEL140:IV:4408599:4414672:1 gene:Y24D9A.1 11/11 A 
Y24D9A.1b ENSEMBL cdna:known chromosome:CEL140:IV:4408852:4412413:1 gene:Y24D9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4412129-4412409(+) 88.21 100.0
Public Domain and Genome References
Ensembl Y24D9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60470 Hypothetical protein Y24D9A.1a [Caenorhabditis elegans] ref|NP_741374.1| Y24D9A.1a [Caenorhabditis elegans] 0.0
blast AAL32234 Hypothetical protein Y24D9A.1b [Caenorhabditis elegans] ref|NP_741375.1| Y24D9A.1b [Caenorhabditis elegans] 0.0
blast CAE58525 Hypothetical protein CBG01680 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174358_S_AT
aagtggtaactccacagacgacgtcttctcagactgagactggcccactgccgccgaaac
gaacgaaacggcccgaatcgtcgagcccgcaactggagcggtcatcgcaaccagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGTAACTCCACAGACGACGTC 78 159 14 Antisense
GTAACTCCACAGACGACGTCTTCTC 578 461 19 Antisense
CACAGACGACGTCTTCTCAGACTGA 618 195 26 Antisense
GACGACGTCTTCTCAGACTGAGACT 539 379 30 Antisense
CTTCTCAGACTGAGACTGGCCCACT 271 221 38 Antisense
CACTGCCGCCGAAACGAACGAAACG 372 165 59 Antisense
GAACGAAACGGCCCGAATCGTCGAG 560 343 74 Antisense
TCGAGCCCGCAACTGGAGCGGTCAT 242 601 94 Antisense
GCCCGCAACTGGAGCGGTCATCGCA 19 287 98 Antisense
GCAACTGGAGCGGTCATCGCAACCA 707 319 102 Antisense
ACTGGAGCGGTCATCGCAACCAGCT 284 97 105 Antisense
Sequence Source Affymetrix Proprietary Database