[Home] | [Total List]

[174357_s_at] phosphatase

Description C30577_rc /REP_DB=TREMBL Accession /GB=C30577 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk255e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 10      6grp_total > 07      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1465
1 2 3 4 range
A 2421
(3)
P 		1046.3
(-3)
P 		1034.8
(-3)
P 		1066.4
(-2.9)
P 		1386
B 2499.3
(3)
P 		1224.2
(-2.8)
P 		1180.8
(-3)
P 		1236.1
(-2.7)
P 		1319
C 2316.8
(3)
P 		1109.7
(-2.7)
P 		1215.2
(-2.2)
P 		1036.3
(-3)
P 		1281
avr 2412.4
(3) 		1126.7
(-2.9) 		1143.6
(-2.9) 		1112.9
(-3) 		1300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1145
1 2 3 4 5 6 range
A 1960.9
(3)
P 		1302.9
(-1)
P 		1394.6
(-0.5)
P 		978.2
(-3)
P 		1112.2
(-2.2)
P 		1060.6
(-2.5)
P 		983
B 1894.3
(3)
P 		1268.8
(-0.8)
P 		1756.7
(2.2)
P 		1320.7
(-0.5)
P 		912.2
(-3)
P 		1082.1
(-2)
P 		982
C 1516.7
(3)
P 		1280.5
(1)
P 		1233.8
(0.6)
P 		1450.9
(2.4)
P 		816.3
(-3)
P 		1244.1
(0.7)
P 		700
avr 1790.6
(3) 		1284.1
(-0.6) 		1461.7
(0.7) 		1249.9
(-0.8) 		946.9
(-3) 		1128.9
(-1.7) 		844
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 725
1 2 3 4 range
A 881.5
(3)
P 		227.1
(-2.4)
P 		270.5
(-2.1)
P 		156.1
(-3)
P 		725
B 797
(3)
P 		302.3
(-2.6)
P 		273.6
(-2.9)
P 		263.4
(-3)
P 		534
C 766.9
(3)
P 		319
(-1.5)
P 		423.5
(-0.5)
P 		174.7
(-3)
P 		592
avr 815.1
(3) 		282.8
(-2.2) 		322.5
(-1.8) 		198.1
(-3) 		617

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 361.5
(0.2)
P 		463.4
(3)
P 		303.7
(-1.5)
P 		248.1
(-3)
P 		335.6
(-0.6)
P 		258.2
(-2.7)
P 		215
B 659.1
(3)
P 		422.3
(-1.6)
P 		426.6
(-1.5)
P 		349.8
(-3)
P 		370.6
(-2.6)
P 		403.5
(-2)
P 		309
C 562.2
(3)
P 		390.7
(-0.5)
P 		314
(-2)
P 		291.8
(-2.4)
P 		264.2
(-3)
P 		416.5
(0.1)
P 		298
avr 527.6
(3) 		425.5
(0.3) 		348.1
(-1.7) 		296.6
(-3) 		323.5
(-2.3) 		359.4
(-1.4) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174357_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21078
Sequence Type Exemplar sequence
Representative Public ID C30577 NCBI
Target Description C30577_rc /REP_DB=TREMBL Accession /GB=C30577 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk255e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065548 NCBI Caenorhabditis elegans T23F11.1 (phosphatase) mRNA, complete cds. 11/11 None
T23F11.1.2 ENSEMBL cdna:known chromosome:CEL140:III:4650357:4653885:1 gene:T23F11.1 11/11 A 
T23F11.1.1 ENSEMBL cdna:known chromosome:CEL140:III:4650457:4653885:1 gene:T23F11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4653489-4653769(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphatase
Ensembl T23F11.1
Entrez Gene 175610 Entrez gene
SwissProt P49596 EMBL-EBI
WormBase CE24009 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13128_AT protein phosphatase 2C, putative / PP2C, putative at
ATH1-121501:253453_AT protein phosphatase 2C, putative / PP2C, putative at
DROSOPHILA_2:1631724_S_AT dm
DROSGENOME1:154425_AT dm
YEAST_2:1774521_AT Type 2C protein phosphatase; dephosphorylates Hog1p (see also Ptc2p) to limit maximal kinase activity induced by osmotic stress; dephosphorylates T169 phosphorylated Cdc28p (see also Ptc2p); role in DNA checkpoint inactivation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8287 protein serine/threonine phosphatase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4722 protein serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86456 Hypothetical protein T23F11.1 [Caenorhabditis elegans] ref|NP_497949.1| T23F11.1 [Caenorhabditis elegans] sp|P49596|PP2C2_CAEEL Probable protein phosphatase 2C T23F11.1 (PP2C) 0.0
blast E88434 protein T23F11.1 [imported] - Caenorhabditis elegans 0.0
blast CAE71168 Hypothetical protein CBG18025 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.7E-98
Sequence
Target Sequence 
>C. ELEGANS:174357_S_AT
gaattgattgcagtgagttatctggaaaaaattcaggaatttcactacatgaaaagttgt
cctctattgttcatcccgccaacttttgcatatccctttttcaaattttattttttgtct
tattcctactctcccatttttaatatgattttttatcagccgtccactttccatgacgcg
tctttgtttcccaagcattgaaagtgtgagatgactcgttttatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGATTGCAGTGAGTTATCTGG 347 323 18 Antisense
AAATTCAGGAATTTCACTACATGAA 37 117 46 Antisense
AAAAGTTGTCCTCTATTGTTCATCC 247 131 69 Antisense
CAACTTTTGCATATCCCTTTTTCAA 286 189 97 Antisense
TTTTGCATATCCCTTTTTCAAATTT 440 677 101 Antisense
TATTTTTTGTCTTATTCCTACTCTC 410 663 126 Antisense
TTCCTACTCTCCCATTTTTAATATG 370 699 140 Antisense
ATGATTTTTTATCAGCCGTCCACTT 103 47 162 Antisense
CACTTTCCATGACGCGTCTTTGTTT 468 197 182 Antisense
CGTCTTTGTTTCCCAAGCATTGAAA 257 247 196 Antisense
AAGTGTGAGATGACTCGTTTTATAC 550 157 219 Antisense
Sequence Source Affymetrix Proprietary Database