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[174355_at]

Description C60069_rc /REP_DB=TREMBL Accession /GB=C60069 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk378b8 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 5.8
(-1.7)
A 		5.2
(-2.7)
A 		5
(-3)
A 		8.8
(3)
A 		4
B 27.3
(1.1)
A 		21
(-0.1)
A 		38.3
(3)
A 		4.3
(-3)
A 		34
C 3.6
(-3)
A 		42.8
(3)
A 		9.9
(-2)
A 		9.2
(-2.1)
A 		39
avr 12.2
(-1.2) 		23
(3) 		17.7
(1) 		7.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 9.8
(-0.1)
A 		17
(3)
A 		3.2
(-3)
A 		16
(2.6)
A 		9.4
(-0.3)
A 		8.1
(-0.9)
A 		14
B 19.9
(3)
A 		17.6
(2.2)
A 		3.4
(-2.8)
A 		17.4
(2.1)
A 		9.9
(-0.5)
A 		2.7
(-3)
A 		17
C 25.8
(-0.5)
A 		4.1
(-2.8)
A 		2.1
(-3)
A 		59.3
(3)
A 		2.1
(-3)
A 		13.4
(-1.8)
A 		57
avr 18.5
(0.3) 		12.9
(-0.9) 		2.9
(-3) 		30.9
(3) 		7.1
(-2.1) 		8.1
(-1.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(3)
A 		1.1
(-3)
A 		1.3
(-1.8)
A 		1.3
(-1.8)
A 		1
B 8.7
(2.9)
A 		5.2
(0.2)
A 		8.9
(3)
A 		0.9
(-3)
A 		8
C 1.2
(-3)
A 		12.3
(3)
A 		3.5
(-1.8)
A 		1.6
(-2.8)
A 		11
avr 4
(0.3) 		6.2
(3) 		4.6
(1) 		1.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.8
(-1.8)
A 		6
(3)
A 		0.7
(-3)
A 		4.1
(0.8)
A 		2.8
(-0.6)
A 		2
(-1.5)
A 		5
B 6.9
(3)
A 		5.9
(2)
A 		0.8
(-3)
A 		4.6
(0.7)
A 		4
(0.1)
A 		1
(-2.8)
A 		6
C 9.6
(1.8)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		11.9
(3)
A 		0.7
(-2.9)
A 		4.5
(-0.9)
A 		11
avr 6.1
(2.2) 		4.4
(0.6) 		0.7
(-3) 		6.9
(3) 		2.5
(-1.3) 		2.5
(-1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21688
Sequence Type Exemplar sequence
Representative Public ID C60069 NCBI
Target Description C60069_rc /REP_DB=TREMBL Accession /GB=C60069 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk378b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072747 NCBI Caenorhabditis elegans W02D7.10 (W02D7.10) mRNA, complete cds. 11/11 None
SNAP00000029340 ENSEMBL cdna:SNAP chromosome:CEL140:V:8323110:8325393:1 11/11 None
W02D7.10 ENSEMBL cdna:known chromosome:CEL140:V:8321044:8325393:1 gene:W02D7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8325108-8325375(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.10
Entrez Gene 179215 Entrez gene
SwissProt Q960A6 EMBL-EBI
WormBase CE28500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505148 W02D7.10 [Caenorhabditis elegans] gb|AAK73900.1| Hypothetical protein W02D7.10 [Caenorhabditis elegans] 1.0E-116
blast NP_505148 W02D7.10 [Caenorhabditis elegans] gb|AAK73900.1| Hypothetical protein W02D7.10 [Caenorhabditis elegans] 5.0E-74
Sequence
Target Sequence 
>C. ELEGANS:174355_AT
gtaactgcaccacatcttctagtaagaccaataaccggattttgggttaatgttacgcaa
tatccaaatcagacatactactggagtgatggctcagcatctgaacaaatggttccacaa
ccagaagtaatagcacctggtggaaaagctctttacacgtttgatcctgttgcacgtgga
aggggaattgtccgaatcatggaacctacgtttgcatcgaaaaacgtttccatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACTGCACCACATCTTCTAGTAA 97 463 14 Antisense
AATGTTACGCAATATCCAAATCAGA 558 161 62 Antisense
AGACATACTACTGGAGTGATGGCTC 627 71 84 Antisense
GAGTGATGGCTCAGCATCTGAACAA 18 401 97 Antisense
TCCACAACCAGAAGTAATAGCACCT 191 587 127 Antisense
GCACCTGGTGGAAAAGCTCTTTACA 220 313 146 Antisense
AAAAGCTCTTTACACGTTTGATCCT 86 131 157 Antisense
GTTTGATCCTGTTGCACGTGGAAGG 41 453 172 Antisense
GGGGAATTGTCCGAATCATGGAACC 186 497 195 Antisense
TCATGGAACCTACGTTTGCATCGAA 409 621 210 Antisense
TTGCATCGAAAAACGTTTCCATCCC 666 701 225 Antisense
Sequence Source Affymetrix Proprietary Database