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[174353_at]

Description C59781_rc /REP_DB=TREMBL Accession /GB=C59781 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 21      6grp_total > 04      4grp_total > 31      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1230
1 2 3 4 range
A 1945
(3)
P 		748.8
(-2.8)
P 		714.6
(-3)
P 		1028.9
(-1.5)
P 		1230
B 1875.5
(3)
P 		766.9
(-2.9)
P 		741.9
(-3)
P 		1464.9
(0.8)
P 		1134
C 1744.4
(3)
P 		755.3
(-3)
P 		824.2
(-2.6)
P 		1171.7
(-0.5)
P 		989
avr 1855
(3) 		757
(-3) 		760.2
(-3) 		1221.8
(-0.5) 		1098

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1078
1 2 3 4 5 6 range
A 1647
(3)
P 		1532.1
(2.2)
P 		1085.8
(-0.9)
P 		1116.2
(-0.7)
P 		1171.1
(-0.3)
P 		780.3
(-3)
P 		867
B 1858
(3)
P 		1673.1
(1.8)
P 		1124.5
(-1.7)
P 		1318.3
(-0.4)
P 		1090.4
(-1.9)
P 		916.6
(-3)
P 		941
C 1549.4
(3)
P 		1522.8
(2.8)
P 		1227.2
(0)
P 		1429.6
(1.9)
P 		1109.6
(-1.1)
P 		901
(-3)
P 		648
avr 1684.8
(3) 		1576
(2.2) 		1145.8
(-0.9) 		1288
(0.1) 		1123.7
(-1.1) 		866
(-3) 		819
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 708.2
(3)
P 		162.6
(-2.9)
P 		186.8
(-2.6)
P 		150.6
(-3)
P 		558
B 598.1
(3)
P 		189.4
(-2.8)
P 		171.9
(-3)
P 		312.2
(-1)
P 		426
C 577.4
(3)
P 		217.1
(-2.7)
P 		287.2
(-1.6)
P 		197.6
(-3)
P 		380
avr 627.9
(3) 		189.7
(-3) 		215.3
(-2.6) 		220.1
(-2.6) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 303.6
(-1.1)
P 		544.9
(3)
P 		236.5
(-2.2)
P 		283.1
(-1.4)
P 		353.4
(-0.2)
P 		190
(-3)
P 		355
B 646.5
(3)
P 		556.9
(1.6)
P 		273.1
(-3)
P 		349.2
(-1.8)
P 		443
(-0.3)
P 		341.8
(-1.9)
P 		373
C 574.3
(3)
P 		464.6
(0.7)
P 		312.3
(-2.5)
P 		287.5
(-3)
P 		359
(-1.5)
P 		301.6
(-2.7)
P 		287
avr 508.1
(2.7) 		522.1
(3) 		274
(-3) 		306.6
(-2.2) 		385.1
(-0.3) 		277.8
(-2.9) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21932
Sequence Type Exemplar sequence
Representative Public ID C59781 NCBI
Target Description C59781_rc /REP_DB=TREMBL Accession /GB=C59781 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59781
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59781 C59781_rc /REP_DB=TREMBL Accession /GB=C59781 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f4 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12455969-12456249(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174353_AT
attgcatctagttttgcactcatgcatttccgaacattccgtctttactttgttttgaaa
aaaaaaccaaaagaatcgttttctttactctcattcgaaatcaccaaaaatctagatccc
aatttcaaaattactcgttttgactgcaactttccatagaatcgcttatgtttcttcccc
tgaacgcatttatattgcattaatattattgacaacactttaatttggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCATCTAGTTTTGCACTCATGC 161 7 30 Antisense
GCACTCATGCATTTCCGAACATTCC 691 315 45 Antisense
TCCGAACATTCCGTCTTTACTTTGT 557 595 58 Antisense
GAATCGTTTTCTTTACTCTCATTCG 392 327 102 Antisense
CTTTACTCTCATTCGAAATCACCAA 250 223 112 Antisense
AATCACCAAAAATCTAGATCCCAAT 179 171 128 Antisense
TACTCGTTTTGACTGCAACTTTCCA 219 647 161 Antisense
GACTGCAACTTTCCATAGAATCGCT 565 373 171 Antisense
TAGAATCGCTTATGTTTCTTCCCCT 54 651 186 Antisense
TTTCTTCCCCTGAACGCATTTATAT 11 673 200 Antisense
TATTGACAACACTTTAATTTGGTAA 274 653 236 Antisense
Sequence Source Affymetrix Proprietary Database