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[174352_s_at] protease

Description C59877_rc /REP_DB=TREMBL Accession /GB=C59877 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk444c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 18      6grp_total > 42      4grp_total > 60      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18092
1 2 3 4 range
A 20070.8
(2.2)
P 		22353.3
(3)
P 		22313.7
(3)
P 		5144.6
(-3)
P 		17209
B 20099
(2.6)
P 		20919.7
(2.9)
P 		21187.6
(3)
P 		5434
(-3)
P 		15754
C 19508.1
(2.9)
P 		19710.3
(3)
P 		19283.5
(2.8)
P 		4261.7
(-3)
P 		15449
avr 19892.6
(2.6) 		20994.4
(3) 		20928.3
(3) 		4946.8
(-3) 		16048

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5805
1 2 3 4 5 6 range
A 19324.7
(1.7)
P 		16964.3
(-1.7)
P 		20236.4
(3)
P 		17016.6
(-1.6)
P 		16606.5
(-2.2)
P 		16026.2
(-3)
P 		4210
B 17403.2
(0.4)
P 		17864.2
(0.9)
P 		19715.9
(3)
P 		17050.2
(-0)
P 		15629.9
(-1.6)
P 		14431.3
(-3)
P 		5285
C 16403.9
(-1.4)
P 		19084
(3)
P 		18469
(2)
P 		18377.4
(1.8)
P 		17488.6
(0.4)
P 		15467
(-3)
P 		3617
avr 17710.6
(0.5) 		17970.8
(0.8) 		19473.8
(3) 		17481.4
(0.1) 		16575
(-1.2) 		15308.2
(-3) 		4166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6589
1 2 3 4 range
A 7307.8
(3)
P 		4852.3
(0.8)
P 		5833.2
(1.7)
P 		753.1
(-3)
P 		6555
B 6409.4
(3)
P 		5166.7
(1.6)
P 		4909.7
(1.3)
P 		1158
(-3)
P 		5251
C 6457.7
(2.7)
P 		5666.8
(1.9)
P 		6720.9
(3)
P 		718.6
(-3)
P 		6002
avr 6725
(3) 		5228.6
(1.5) 		5821.3
(2.1) 		876.6
(-3) 		5848

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2788
1 2 3 4 5 6 range
A 3562.4
(-3)
P 		6033.3
(3)
P 		4407.1
(-0.9)
P 		4315.8
(-1.2)
P 		5011.1
(0.5)
P 		3901.9
(-2.2)
P 		2471
B 6055.5
(2)
P 		5946.2
(1.7)
P 		4787.6
(-2.1)
P 		4516
(-3)
P 		6350.2
(3)
P 		5381.4
(-0.2)
P 		1834
C 6080.2
(3)
P 		5823.1
(2.4)
P 		4700.7
(-0.5)
P 		3695.7
(-3)
P 		5659
(1.9)
P 		5177.7
(0.7)
P 		2385
avr 5232.7
(0.6) 		5934.2
(3) 		4631.8
(-1.4) 		4175.8
(-3) 		5673.4
(2.1) 		4820.3
(-0.8) 		1758
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174352_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21771
Sequence Type Exemplar sequence
Representative Public ID C59877 NCBI
Target Description C59877_rc /REP_DB=TREMBL Accession /GB=C59877 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk444c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072734(11), U34889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072734 NCBI Caenorhabditis elegans F21F8.3 (protease) mRNA, complete cds. 11/11 A 
U34889 NCBI Caenorhabditis elegans aspartic protease (Ceasp1) mRNA, complete cds. 11/11 A 
SNAP00000008547 ENSEMBL cdna:SNAP chromosome:CEL140:V:8274977:8276578:1 11/11 None
GENEFINDER00000008563 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8274977:8278347:1 9/11 None
F21F8.3.2 ENSEMBL cdna:known chromosome:CEL140:V:8274973:8276637:1 gene:F21F8.3 11/11 None
F21F8.3.1 ENSEMBL cdna:known chromosome:CEL140:V:8274975:8276637:1 gene:F21F8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8276186-8276610(+) 100.0 100.0
Public Domain and Genome References
Gene Title protease
Gene Symbol asp-5
Ensembl F21F8.3
Entrez Gene 179211 Entrez gene
SwissProt O01532 EMBL-EBI
WormBase CE09539 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47991 Aspartyl protease protein 5 [Caenorhabditis elegans] ref|NP_505135.1| F21F8.3 [Caenorhabditis elegans] 0.0
blast CAE66086 Hypothetical protein CBG11303 [Caenorhabditis briggsae] 0.0
blast AAB06576 aspartic protease 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 5.8E-70
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 4.4E-75
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.7E-65
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.3E-7
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 4.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505135.1 1 4-26
F21F8.3.2 1 4-26
F21F8.3.1 1 4-26
SNAP00000008547 1 4-26
GENEFINDER00000008563 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:174352_S_AT
ggacattaccatcggaggaaaggtctactcaattaacccagtcaactacatcgttgacgt
tggaatgggagacacctgcgtcttcgctgccttcgcttttaacaacttcggattcggacc
agcttggattctcggagatccattcatccgtcaattctgtaatatttacgatattggagg
acaacgtatgggattcgccaactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATTACCATCGGAGGAAAGGTC 201 525 80 Antisense
AGGTCTACTCAATTAACCCAGTCAA 652 53 100 Antisense
CTCAATTAACCCAGTCAACTACATC 599 225 107 Antisense
ACTACATCGTTGACGTTGGAATGGG 666 97 124 Antisense
TGGAATGGGAGACACCTGCGTCTTC 646 545 140 Antisense
AACAACTTCGGATTCGGACCAGCTT 131 135 180 Antisense
GGACCAGCTTGGATTCTCGGAGATC 420 523 195 Antisense
GATTCTCGGAGATCCATTCATCCGT 311 431 206 Antisense
ATCCATTCATCCGTCAATTCTGTAA 573 39 217 Antisense
GGAGGACAACGTATGGGATTCGCCA 606 515 255 Antisense
ACAACGTATGGGATTCGCCAACTCC 215 23 260 Antisense
Sequence Source Affymetrix Proprietary Database