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[174349_at]

Description C29907_rc /REP_DB=TREMBL Accession /GB=C29907 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk228b5 : 3prime end, single read.
Cluster 6grp_total > 58      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 1
(-3)
A 		30.7
(2)
A 		18.3
(-0.1)
A 		36.4
(3)
A 		35
B 5
(-3)
A 		8.5
(-2.4)
A 		11.9
(-1.8)
A 		39.8
(3)
P 		35
C 0.5
(-3)
A 		26.9
(0.1)
A 		9.3
(-2)
A 		51.4
(3)
P 		51
avr 2.2
(-3) 		22
(-0.1) 		13.2
(-1.4) 		42.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 60.1
(-0.7)
P 		39.6
(-1.8)
A 		22.2
(-2.7)
A 		17.2
(-3)
A 		36.4
(-2)
P 		130.4
(3)
P 		113
B 59.7
(-1.4)
P 		29.9
(-2.2)
P 		2.7
(-3)
A 		8.9
(-2.8)
A 		29.3
(-2.2)
P 		214.8
(3)
P 		212
C 48
(-1.1)
P 		22.8
(-2.1)
P 		0.9
(-3)
A 		26.4
(-2)
A 		31.7
(-1.8)
P 		152.1
(3)
P 		151
avr 55.9
(-1.2) 		30.8
(-2.2) 		8.6
(-3) 		17.5
(-2.7) 		32.5
(-2.1) 		165.8
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		6.7
(3)
A 		4.8
(1.2)
A 		5.3
(1.7)
A 		6
B 1.6
(-3)
A 		2.1
(-2.6)
A 		2.8
(-2)
A 		8.5
(3)
P 		7
C 0.2
(-3)
A 		7.7
(2.3)
A 		3.2
(-0.9)
A 		8.7
(3)
P 		9
avr 0.7
(-3) 		5.5
(1.2) 		3.6
(-0.4) 		7.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 11.1
(-1.5)
P 		14.1
(-0.9)
A 		4.8
(-2.9)
A 		4.4
(-3)
A 		11
(-1.6)
P 		31.8
(3)
P 		27
B 20.8
(-1.5)
P 		9.9
(-2.3)
P 		0.7
(-3)
A 		2.3
(-2.9)
A 		11.9
(-2.2)
P 		80.1
(3)
P 		79
C 17.8
(-0.9)
P 		7
(-2.2)
P 		0.2
(-3)
A 		5.3
(-2.4)
A 		10.3
(-1.8)
P 		50.9
(3)
P 		51
avr 16.6
(-1.3) 		10.3
(-2) 		1.9
(-3) 		4
(-2.8) 		11.1
(-1.9) 		54.3
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20653
Sequence Type Exemplar sequence
Representative Public ID C29907 NCBI
Target Description C29907_rc /REP_DB=TREMBL Accession /GB=C29907 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk228b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062626 NCBI Caenorhabditis elegans EEED8.15 (EEED8.15) mRNA, complete cds. 11/11 None
EEED8.15 ENSEMBL cdna:known chromosome:CEL140:II:5419218:5420999:1 gene:EEED8.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006553 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006565 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5420701-5420987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EEED8.15
Entrez Gene 173924 Entrez gene
SwissProt Q95QN5 EMBL-EBI
WormBase CE26747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68297 Hypothetical protein EEED8.15 [Caenorhabditis elegans] ref|NP_495027.1| EEED8.15 [Caenorhabditis elegans] 0.0
blast T15929 hypothetical protein EEED8.1 - Caenorhabditis elegans 1.0E-133
blast CAE59099 Hypothetical protein CBG02393 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:174349_AT
atgtgcacacaaacaattccggcgaaaggactatacgcatttttgaacgagttcagggaa
aatcagatatcttgtactcaattgcaaacgtcggaggactctatctcaaattttggtgat
cacctgctttcttcaatccacacaacttggtctcgcaacgaaatatcatcttaatgattc
tcaaattcacagcattaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCACACAAACAATTCCGGCGA 572 49 50 Antisense
CCGGCGAAAGGACTATACGCATTTT 263 265 68 Antisense
CTATACGCATTTTTGAACGAGTTCA 201 225 80 Antisense
GGGAAAATCAGATATCTTGTACTCA 86 495 105 Antisense
TCTTGTACTCAATTGCAAACGTCGG 535 607 119 Antisense
GCAAACGTCGGAGGACTCTATCTCA 192 319 133 Antisense
AGGACTCTATCTCAAATTTTGGTGA 3 23 144 Antisense
TTTTGGTGATCACCTGCTTTCTTCA 308 677 160 Antisense
AATCCACACAACTTGGTCTCGCAAC 562 167 184 Antisense
GTCTCGCAACGAAATATCATCTTAA 387 471 199 Antisense
TGATTCTCAAATTCACAGCATTAAT 62 563 224 Antisense
Sequence Source Affymetrix Proprietary Database