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[174348_at]

Description C33275_rc /REP_DB=TREMBL Accession /GB=C33275 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 30      6grp_highest_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 481.3
(3)
P 		239.8
(-3)
P 		282.5
(-1.9)
P 		337.8
(-0.6)
P 		242
B 497.7
(3)
P 		345.7
(-0.6)
P 		241.7
(-3)
P 		425.8
(1.3)
P 		256
C 524.8
(3)
P 		357
(-0.5)
P 		240.9
(-3)
P 		394
(0.2)
P 		284
avr 501.3
(3) 		314.2
(-1.6) 		255
(-3) 		385.9
(0.2) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 336.9
(1.4)
P 		377.7
(3)
P 		225.6
(-2.9)
P 		227.6
(-2.9)
P 		247
(-2.1)
P 		224.2
(-3)
P 		154
B 499
(3)
P 		371.9
(0.2)
P 		221.7
(-3)
P 		339.4
(-0.5)
P 		278.3
(-1.8)
P 		328.4
(-0.7)
P 		277
C 450.7
(3)
P 		345.3
(0.6)
P 		185.5
(-3)
P 		246.8
(-1.6)
P 		298.3
(-0.4)
P 		283.5
(-0.8)
P 		265
avr 428.9
(3) 		365
(1.2) 		210.9
(-3) 		271.3
(-1.3) 		274.5
(-1.2) 		278.7
(-1.1) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 175.2
(3)
P 		52
(-2.9)
P 		73.9
(-1.8)
P 		49.4
(-3)
P 		126
B 158.7
(3)
P 		85.4
(-1.3)
P 		56
(-3)
P 		90.7
(-1)
P 		103
C 173.7
(3)
P 		102.7
(-1)
P 		84
(-2)
P 		66.4
(-3)
P 		107
avr 169.2
(3) 		80
(-2.3) 		71.3
(-2.9) 		68.8
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 62.1
(-2.1)
P 		134.3
(3)
P 		49.1
(-3)
P 		57.7
(-2.4)
P 		74.5
(-1.2)
P 		54.6
(-2.6)
P 		85
B 173.6
(3)
P 		123.8
(0.5)
P 		53.8
(-3)
P 		89.9
(-1.2)
P 		113.1
(-0)
P 		122.5
(0.4)
P 		120
C 167.1
(3)
P 		105.4
(-0.1)
P 		47.2
(-3)
P 		49.6
(-2.9)
P 		96.5
(-0.5)
P 		94.9
(-0.6)
P 		120
avr 134.3
(3) 		121.2
(2.1) 		50
(-3) 		65.7
(-1.9) 		94.7
(0.2) 		90.7
(-0.1) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21200
Sequence Type Exemplar sequence
Representative Public ID C33275 NCBI
Target Description C33275_rc /REP_DB=TREMBL Accession /GB=C33275 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065648 NCBI Caenorhabditis elegans C26E6.2 (C26E6.2) mRNA, complete cds. 11/11 None
C26E6.2 ENSEMBL cdna:known chromosome:CEL140:III:4952083:4955073:1 gene:C26E6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4954728-4955008(+) 90.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E6.2
Entrez Gene 175670 Entrez gene
SwissProt Q18225 EMBL-EBI
WormBase CE32143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21156 Hypothetical protein C26E6.2 [Caenorhabditis elegans] ref|NP_498049.2| C26E6.2 [Caenorhabditis elegans] 0.0
blast CAE71310 Hypothetical protein CBG18201 [Caenorhabditis briggsae] 1.0E-137
blast CAA21587 Hypothetical protein Y11D7A.12 [Caenorhabditis elegans] ref|NP_501618.2| Y11D7A.12 [Caenorhabditis elegans] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:174348_AT
ctcccttatcttgtctctataatcttgtctgtttctcaacaaaaaagctcgtcgtcaggt
cccccatttccggatctcattgtgaacttttcagaaaagttcgcaaattttcatattcct
tgtcaattccaatctctatgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTTATCTTGTCTCTATAATCT 637 233 67 Antisense
ATCTTGTCTCTATAATCTTGTCTGT 458 31 74 Antisense
GTCTCTATAATCTTGTCTGTTTCTC 203 471 79 Antisense
TAATCTTGTCTGTTTCTCAACAAAA 562 635 86 Antisense
CAACAAAAAAGCTCGTCGTCAGGTC 24 189 103 Antisense
CCCATTTCCGGATCTCATTGTGAAC 209 259 129 Antisense
CGGATCTCATTGTGAACTTTTCAGA 668 243 137 Antisense
AAAGTTCGCAAATTTTCATATTCCT 179 123 162 Antisense
ATTTTCATATTCCTTGTCAATTCCA 351 15 173 Antisense
TATTCCTTGTCAATTCCAATCTCTA 164 665 180 Antisense
TTGTCAATTCCAATCTCTATGTCTC 702 707 186 Antisense
Sequence Source Affymetrix Proprietary Database