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[174347_s_at]

Description CEK102G9R /REP_DB=TREMBL Accession /GB=D66573 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 30      4grp_high_8_8 > 49      6grp_highest_nonorm > 51      6grp_total > 34      4grp_total > 62      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 442
1 2 3 4 range
A 600.2
(3)
P 		429.5
(0.5)
P 		450.7
(0.8)
P 		184.6
(-3)
P 		416
B 600.6
(3)
P 		395.9
(0.2)
P 		417.4
(0.5)
P 		159.1
(-3)
A 		442
C 569.4
(3)
P 		370.2
(-0.7)
P 		401.3
(-0.1)
P 		243.4
(-3)
P 		326
avr 590.1
(3) 		398.5
(0.1) 		423.1
(0.5) 		195.7
(-3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 606.1
(0.1)
P 		593.2
(-0)
P 		908.7
(3)
P 		391.4
(-2)
P 		281.7
(-3)
P 		351.1
(-2.3)
P 		627
B 640.7
(0.8)
P 		719.5
(1.8)
P 		807.7
(3)
P 		572.8
(-0.1)
P 		354.8
(-3)
P 		435.4
(-1.9)
P 		453
C 575.8
(1.4)
P 		699.1
(3)
P 		684.9
(2.8)
P 		515.9
(0.6)
P 		243
(-3)
P 		420.1
(-0.7)
P 		456
avr 607.5
(0.7) 		670.6
(1.5) 		800.4
(3) 		493.4
(-0.6) 		293.2
(-3) 		402.2
(-1.7) 		507
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 218.5
(3)
P 		93.2
(-0.9)
P 		117.8
(-0.2)
P 		27
(-3)
P 		192
B 191.5
(3)
P 		97.8
(-0.6)
P 		96.7
(-0.6)
P 		33.9
(-3)
A 		158
C 188.5
(3)
P 		106.4
(-0.3)
P 		139.9
(1)
P 		41
(-3)
P 		148
avr 199.5
(3) 		99.1
(-0.6) 		118.1
(0) 		34
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 111.7
(-1.7)
P 		211
(3)
P 		197.9
(2.4)
P 		99.3
(-2.3)
P 		85
(-3)
P 		85.5
(-3)
P 		126
B 222.9
(2)
P 		239.5
(3)
P 		196.1
(0.3)
P 		151.7
(-2.5)
P 		144.1
(-3)
P 		162.4
(-1.8)
P 		95
C 213.4
(3)
P 		213.3
(3)
P 		174.3
(1.3)
P 		103.7
(-1.9)
P 		78.6
(-3)
P 		140.6
(-0.2)
P 		135
avr 182.7
(1) 		221.3
(3) 		189.4
(1.4) 		118.2
(-2.2) 		102.6
(-3) 		129.5
(-1.6) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174347_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21472
Sequence Type Exemplar sequence
Representative Public ID CEK102G9R NCBI
Target Description CEK102G9R /REP_DB=TREMBL Accession /GB=D66573 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069080 NCBI Caenorhabditis elegans C49C8.5 (C49C8.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000039882 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8648672:8650485:-1 11/11 None
C49C8.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:8648658:8653659:-1 gene:C49C8.5 11/11 None
C49C8.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:8648658:8653646:-1 gene:C49C8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039872 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8648673-8649217(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C8.5
Entrez Gene 177668 Entrez gene
SwissProt Q18705 EMBL-EBI
WormBase CE31453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03126 Hypothetical protein C49C8.5 [Caenorhabditis elegans] ref|NP_501481.2| C49C8.5 [Caenorhabditis elegans] 0.0
blast CAE60731 Hypothetical protein CBG04412 [Caenorhabditis briggsae] 1.0E-114
blast CAA19505 Hypothetical protein Y43C5A.2 [Caenorhabditis elegans] ref|NP_501883.1| Y43C5A.2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 8.6E-12
Sequence
Target Sequence 
>C. ELEGANS:174347_S_AT
tgatgacaacggcggagctggaccttccaagggatacggtggctggtggtacggaagttg
tggaaataatttgaatggtttcttgtatccaaataataatggcgattgttcagtcacaaa
attcgactcaactctgcttcttggtataaatatgagaacaacaactggaacagcaactgg
tggatatgatgtggatttgatttcatatgatagagttcgaatggctcttttcacttttga
tacaactttgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGACAACGGCGGAGCTGGACCT 233 565 73 Antisense
GGAGCTGGACCTTCCAAGGGATACG 378 517 86 Antisense
GGACCTTCCAAGGGATACGGTGGCT 135 519 92 Antisense
GATACGGTGGCTGGTGGTACGGAAG 79 425 105 Antisense
AATGGTTTCTTGTATCCAAATAATA 557 161 146 Antisense
TAATAATGGCGATTGTTCAGTCACA 332 633 166 Antisense
AAAATTCGACTCAACTCTGCTTCTT 465 133 190 Antisense
GACTCAACTCTGCTTCTTGGTATAA 587 373 197 Antisense
ACAACTGGAACAGCAACTGGTGGAT 296 113 233 Antisense
GAGTTCGAATGGCTCTTTTCACTTT 516 395 285 Antisense
TTCACTTTTGATACAACTTTGATTG 352 687 302 Antisense
Sequence Source Affymetrix Proprietary Database