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[174346_at]

Description C29399_rc /REP_DB=TREMBL Accession /GB=C29399 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk210a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_high_8_8 > 12      6grp_highest_nonorm > 91      6grp_total > 59      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 159.3
(-0.4)
P 		66.7
(-3)
A 		103.1
(-2)
P 		279.2
(3)
P 		213
B 179.8
(-1.2)
P 		109.7
(-2.3)
P 		64.6
(-3)
A 		442.7
(3)
P 		378
C 175.8
(-0.9)
P 		164.3
(-1.1)
P 		85.9
(-3)
P 		340.1
(3)
P 		254
avr 171.6
(-1.1) 		113.6
(-2.4) 		84.5
(-3) 		354
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 256.2
(3)
P 		168.6
(-0.1)
P 		86.3
(-3)
P 		86.1
(-3)
P 		193.1
(0.8)
P 		203.2
(1.1)
P 		170
B 173.1
(-0.9)
P 		143.2
(-1.5)
P 		122.7
(-2)
P 		72.1
(-3)
P 		179
(-0.8)
P 		361.9
(3)
P 		290
C 228.9
(1.2)
P 		143.7
(-1.8)
P 		207.1
(0.5)
P 		110.2
(-3)
P 		155.5
(-1.4)
P 		278.6
(3)
P 		168
avr 219.4
(1.1) 		151.8
(-1.1) 		138.7
(-1.5) 		89.5
(-3) 		175.9
(-0.3) 		281.2
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 58
(3)
P 		14.5
(-3)
A 		27
(-1.3)
P 		40.9
(0.6)
P 		44
B 57.3
(0.2)
P 		27.1
(-2.1)
P 		15
(-3)
A 		94.3
(3)
P 		79
C 58.2
(3)
P 		47.2
(0.7)
P 		30
(-3)
P 		57.3
(2.8)
P 		28
avr 57.8
(2) 		29.6
(-2.2) 		24
(-3) 		64.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 47.2
(1.1)
P 		60
(3)
P 		18.8
(-3)
P 		21.8
(-2.6)
P 		58.3
(2.8)
P 		49.5
(1.5)
P 		41
B 60.2
(-0.9)
P 		47.7
(-1.5)
P 		29.8
(-2.4)
P 		19.1
(-3)
P 		72.7
(-0.2)
P 		135
(3)
P 		116
C 84.8
(2.3)
P 		43.8
(-1.2)
P 		52.7
(-0.4)
P 		22.2
(-3)
P 		50.3
(-0.6)
P 		93.3
(3)
P 		71
avr 64.1
(0.6) 		50.5
(-0.5) 		33.8
(-1.9) 		21
(-3) 		60.4
(0.3) 		92.6
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20652
Sequence Type Exemplar sequence
Representative Public ID C29399 NCBI
Target Description C29399_rc /REP_DB=TREMBL Accession /GB=C29399 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk210a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C29399
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C29399 C29399_rc /REP_DB=TREMBL Accession /GB=C29399 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk210a3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3919795-3920076(-) 50.53 100.0
Sequence
Target Sequence 
>C. ELEGANS:174346_AT
aaagctttattctacgatacctctcccatcgcttttaatacactgtacccgactttgaca
gcttatatctctgctcaaattgaagatatcagagcattttcaactagaaatctatagaaa
aatgtgtgagaaactttctgttagttgaacattttctggtaaaaccaattagaaccgaga
tatgaccaattttggtgttagagcccaaaatatcgcacatccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTTTATTCTACGATACCTCTC 171 123 40 Antisense
TCTCCCATCGCTTTTAATACACTGT 74 611 61 Antisense
TAATACACTGTACCCGACTTTGACA 132 635 75 Antisense
GTACCCGACTTTGACAGCTTATATC 349 457 84 Antisense
GACAGCTTATATCTCTGCTCAAATT 581 367 96 Antisense
AGAGCATTTTCAACTAGAAATCTAT 20 71 130 Antisense
GTGAGAAACTTTCTGTTAGTTGAAC 181 463 165 Antisense
TGTTAGTTGAACATTTTCTGGTAAA 127 559 178 Antisense
TTAGAACCGAGATATGACCAATTTT 84 669 208 Antisense
GACCAATTTTGGTGTTAGAGCCCAA 570 383 223 Antisense
AGAGCCCAAAATATCGCACATCCCT 670 69 239 Antisense
Sequence Source Affymetrix Proprietary Database