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[174345_at]

Description C51942_rc /REP_DB=TREMBL Accession /GB=C51942 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 14      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 30      6grp_total > 13      4grp_total > 38      6grp_highest_sub > 02      6grp_cgc > 41      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1179
1 2 3 4 range
A 1382.6
(3)
P 		654.6
(-1.2)
P 		330.9
(-3)
P 		492.5
(-2.1)
P 		1052
B 1482.9
(3)
P 		598.1
(-1.5)
P 		304.4
(-3)
P 		543.9
(-1.8)
P 		1179
C 1267.7
(3)
P 		583.5
(-1.3)
P 		322.2
(-3)
P 		531.5
(-1.7)
P 		946
avr 1377.7
(3) 		612.1
(-1.3) 		319.2
(-3) 		522.6
(-1.8) 		1059

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 901
1 2 3 4 5 6 range
A 1153
(1.9)
P 		1320
(3)
P 		511
(-2.5)
P 		708.3
(-1.1)
P 		682.2
(-1.3)
P 		434.4
(-3)
P 		886
B 1147.3
(3)
P 		1114.8
(2.7)
P 		622.6
(-1.7)
P 		851
(0.3)
P 		541.5
(-2.5)
P 		483.5
(-3)
P 		664
C 1118.2
(2.2)
P 		1226.5
(3)
P 		964.4
(1.1)
P 		966.4
(1.1)
P 		424.3
(-3)
P 		419.3
(-3)
P 		807
avr 1139.5
(2.4) 		1220.4
(3) 		699.3
(-1) 		841.9
(0.1) 		549.3
(-2.2) 		445.7
(-3) 		775
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 503.4
(3)
P 		142.1
(-2)
P 		86.5
(-2.8)
P 		72.1
(-3)
P 		431
B 472.9
(3)
P 		147.7
(-1.8)
P 		70.5
(-3)
P 		115.9
(-2.3)
P 		402
C 419.6
(3)
P 		167.8
(-1.6)
P 		112.3
(-2.6)
P 		89.6
(-3)
P 		330
avr 465.3
(3) 		152.5
(-2) 		89.8
(-3) 		92.5
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 212.5
(-1.2)
P 		469.5
(3)
P 		111.3
(-2.9)
P 		179.6
(-1.8)
P 		205.8
(-1.4)
P 		105.8
(-3)
P 		364
B 399.2
(3)
P 		371.1
(2.3)
P 		151.2
(-3)
P 		225.4
(-1.2)
P 		220
(-1.3)
P 		180.3
(-2.3)
P 		248
C 414.5
(3)
P 		374.2
(2.1)
P 		245.5
(-0.7)
P 		194.3
(-1.8)
P 		137.3
(-3)
P 		140.4
(-2.9)
P 		277
avr 342.1
(1.6) 		404.9
(3) 		169.3
(-2.4) 		199.8
(-1.7) 		187.7
(-2) 		142.2
(-3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21697
Sequence Type Exemplar sequence
Representative Public ID C51942 NCBI
Target Description C51942_rc /REP_DB=TREMBL Accession /GB=C51942 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029031(11), NM_001029033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029031 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
NM_001029033 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
W06H8.8e ENSEMBL cdna:known chromosome:CEL140:V:6123860:6205127:-1 gene:W06H8.8 11/11 A 
W06H8.8g ENSEMBL cdna:known chromosome:CEL140:V:6123881:6205127:-1 gene:W06H8.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025064 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025079 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
266969 7 2 NM_001029029 183162_at (11)
NM_001029030 176443_s_at (10), 183162_at (11), 185778_at (11)
NM_001029031 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029032 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029033 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6123935-6124213(-) 100.0 100.0
Public Domain and Genome References
Ensembl W06H8.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024202 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 0.0
blast NP_001024204 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] 0.0
blast NP_001024203 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-52
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 3.0E-85
Protein Domains
Database ID Description E-Value
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.30000019073486
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.19999980926514
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.3E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.4E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.9E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-12
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-83
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0015
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0041
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.077
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.89
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.48
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0025
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.4E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.71
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.012
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0084
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-5
Sequence
Target Sequence 
>C. ELEGANS:174345_AT
gattcgtcggtagaaacattttcgcttaatttttataaattcaaatcaatcaatactttt
ttattgggtagttttgccattttagttgtattaccttgccgagattagtttccactattc
gaaacgaaaggaccatttcaaatgttatgttctatgatacttcacgaaatctttcattgt
cttcgaaaaagtcccctgatatgtatatcccatgttttccccaatatatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGTCGGTAGAAACATTTTCGC 503 431 27 Antisense
GGTAGTTTTGCCATTTTAGTTGTAT 476 497 93 Antisense
TAGTTGTATTACCTTGCCGAGATTA 460 651 109 Antisense
TACCTTGCCGAGATTAGTTTCCACT 63 649 118 Antisense
GCCGAGATTAGTTTCCACTATTCGA 65 285 124 Antisense
GTTATGTTCTATGATACTTCACGAA 338 447 170 Antisense
CTTCACGAAATCTTTCATTGTCTTC 47 223 186 Antisense
CATTGTCTTCGAAAAAGTCCCCTGA 117 213 201 Antisense
GAAAAAGTCCCCTGATATGTATATC 456 351 211 Antisense
ATATGTATATCCCATGTTTTCCCCA 568 19 225 Antisense
TCCCATGTTTTCCCCAATATATCAT 608 597 234 Antisense
Sequence Source Affymetrix Proprietary Database