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[174344_at]

Description C33769_rc /REP_DB=TREMBL Accession /GB=C33769 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk374d6 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 13.4
(0.9)
A 		4.1
(-2.5)
A 		19.4
(3)
A 		2.6
(-3)
A 		17
B 21.9
(1.2)
A 		21.5
(1.1)
A 		7.4
(-3)
A 		28.1
(3)
A 		21
C 13
(-2.1)
A 		22.6
(-0.6)
A 		6.9
(-3)
A 		46.2
(3)
A 		39
avr 16.1
(-1) 		16.1
(-1) 		11.2
(-3) 		25.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.9
(-1.1)
A 		2
(-3)
A 		4.8
(3)
A 		2.2
(-2.6)
A 		3.5
(0.2)
A 		2.9
(-1.1)
A 		3
B 2.8
(-2.4)
A 		2.6
(-2.6)
A 		2
(-3)
A 		2.2
(-2.9)
A 		10
(3)
A 		2.3
(-2.8)
A 		8
C 0.9
(-2.7)
A 		6.3
(0.3)
A 		11.2
(3)
A 		4
(-1)
A 		3.2
(-1.4)
A 		0.4
(-3)
A 		11
avr 2.2
(-2.6) 		3.6
(-0.5) 		6
(3) 		2.8
(-1.7) 		5.6
(2.4) 		1.9
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.9
(2.7)
A 		0.9
(-2.4)
A 		5.1
(3)
A 		0.4
(-3)
A 		5
B 7
(3)
A 		5.3
(1.1)
A 		1.7
(-3)
A 		6
(1.9)
A 		5
C 4.3
(-0.9)
A 		6.5
(1.6)
A 		2.4
(-3)
A 		7.8
(3)
A 		5
avr 5.4
(3) 		4.2
(-0.1) 		3.1
(-3) 		4.7
(1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-1)
A 		1
(2)
A 		0.6
(-2)
A 		1.1
(3)
A 		0.7
(-1)
A 		1
B 1
(-2.2)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		4.1
(3)
A 		0.9
(-2.3)
A 		4
C 0.3
(-2.6)
A 		1.9
(1)
A 		2.8
(3)
A 		0.8
(-1.4)
A 		1
(-1)
A 		0.1
(-3)
A 		3
avr 0.6
(-3) 		1.2
(-0.6) 		1.4
(0.2) 		0.7
(-2.6) 		2.1
(3) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20664
Sequence Type Exemplar sequence
Representative Public ID C33769 NCBI
Target Description C33769_rc /REP_DB=TREMBL Accession /GB=C33769 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk374d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062201 NCBI Caenorhabditis elegans M151.1 (M151.1) mRNA, complete cds. 11/11 A 
M151.1 ENSEMBL cdna:known chromosome:CEL140:II:3641494:3644076:1 gene:M151.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3643785-3644065(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M151.1
Entrez Gene 173708 Entrez gene
SwissProt O17121 EMBL-EBI
WormBase CE36880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494602 M151.1 [Caenorhabditis elegans] gb|AAB70378.4| Hypothetical protein M151.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174344_AT
gggtaaccgtgtgaggaatagttctaaaaaagttgttcaaattttcagacgatcttctcg
tctagcttgacgcccttccaagtttatcttgtctccagtaaccacattcctaatggtttt
attttcgatgttaccagtgctataattattcccactttttccaaaatttatactctttta
atttcacttatcaaagttcaaatttatccacccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTAACCGTGTGAGGAATAGTTCT 178 485 30 Antisense
TCAAATTTTCAGACGATCTTCTCGT 59 629 66 Antisense
GACGCCCTTCCAAGTTTATCTTGTC 98 381 98 Antisense
AGTTTATCTTGTCTCCAGTAACCAC 660 61 110 Antisense
TCTCCAGTAACCACATTCCTAATGG 69 609 121 Antisense
CATTCCTAATGGTTTTATTTTCGAT 288 217 134 Antisense
TTATTTTCGATGTTACCAGTGCTAT 366 677 148 Antisense
GTTACCAGTGCTATAATTATTCCCA 251 447 159 Antisense
GCTATAATTATTCCCACTTTTTCCA 411 303 168 Antisense
TATACTCTTTTAATTTCACTTATCA 205 661 198 Antisense
CAAAGTTCAAATTTATCCACCCGAT 552 191 221 Antisense
Sequence Source Affymetrix Proprietary Database