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[174343_at]

Description C55590_rc /REP_DB=TREMBL Accession /GB=C55590 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk206a4 : 3prime end, single read.
Cluster 6grp_total > 80      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 14.4
(-0.7)
A 		3.7
(-3)
A 		4.5
(-2.8)
A 		31.9
(3)
A 		28
B 2.2
(-3)
A 		8.5
(-0.3)
A 		16.3
(3)
A 		3.2
(-2.6)
A 		14
C 11.4
(-1.3)
A 		5.3
(-2.8)
A 		4.5
(-3)
A 		28.6
(3)
A 		24
avr 9.3
(-1.6) 		5.8
(-3) 		8.4
(-2) 		21.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.1
(2.9)
A 		1.5
(-3)
A 		3.7
(-1.5)
A 		1.9
(-2.7)
A 		10.2
(3)
A 		4.3
(-1.1)
A 		9
B 1
(-3)
A 		1.2
(-2.9)
A 		1.5
(-2.7)
A 		13.2
(3)
A 		0.9
(-3)
A 		11.9
(2.4)
A 		12
C 0.9
(-2.9)
A 		9.3
(0.2)
A 		0.7
(-3)
A 		16.9
(3)
A 		4.3
(-1.7)
A 		3
(-2.1)
A 		16
avr 4
(-1.6) 		4
(-1.6) 		2
(-3) 		10.7
(3) 		5.1
(-0.9) 		6.4
(0) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.2
(3)
A 		0.8
(-3)
A 		1.2
(-2.5)
A 		4.7
(2.3)
A 		4
B 0.7
(-3)
A 		2.1
(-0.3)
A 		3.8
(3)
A 		0.7
(-3)
A 		3
C 3.8
(1.2)
A 		1.5
(-3)
A 		1.6
(-2.8)
A 		4.8
(3)
A 		3
avr 3.2
(2.4) 		1.5
(-3) 		2.2
(-0.8) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.9
(0.2)
A 		0.5
(-3)
A 		0.8
(-2.3)
A 		0.5
(-3)
A 		3.1
(3)
A 		1
(-1.8)
A 		3
B 0.4
(-2.9)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		3.5
(1.6)
A 		0.3
(-3)
A 		4.5
(3)
A 		4
C 0.3
(-2.8)
A 		2.8
(1.9)
A 		0.2
(-3)
A 		3.4
(3)
A 		1.4
(-0.8)
A 		1
(-1.5)
A 		3
avr 0.9
(-1.8) 		1.2
(-0.9) 		0.5
(-3) 		2.5
(3) 		1.6
(0.3) 		2.2
(2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20927
Sequence Type Exemplar sequence
Representative Public ID C55590 NCBI
Target Description C55590_rc /REP_DB=TREMBL Accession /GB=C55590 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk206a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006281 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12538879:12547813:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12546720-12546998(-) 80.94 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35836 Hypothetical protein Y111B2A.8 [Caenorhabditis elegans] ref|NP_499637.2| Y111B2A.8 [Caenorhabditis elegans] 0.0
blast CAE66414 Hypothetical protein CBG11682 [Caenorhabditis briggsae] 1.0E-162
blast NP_998326 AMP-activated protein kinase subunit gamma 1 [Danio rerio] gb|AAH59181.1| Zgc:63896 [Danio rerio] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 5.1E-5
Pfam IPR000644 EMBL-EBI CBS domain 5.5E-11
Pfam IPR000644 EMBL-EBI CBS domain 3.4E-10
Pfam IPR000644 EMBL-EBI CBS domain 6.5E-10
Sequence
Target Sequence 
>C. ELEGANS:174343_AT
tttttccagatccagaatatactctgaatagttagtatttactaacttactactaggaga
gtatatcgttttcggtcgttatgctctaattcgataccgagctaattttaaacaatttca
attctttcaagcttcaacatttatctgaagtactagatttagaatatactctgaatatgt
tagttagtactcacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCCAGATCCAGAATATACTCT 300 675 21 Antisense
GTATTTACTAACTTACTACTAGGAG 155 447 55 Antisense
GGAGAGTATATCGTTTTCGGTCGTT 260 517 76 Antisense
TATCGTTTTCGGTCGTTATGCTCTA 318 659 84 Antisense
GTTTTCGGTCGTTATGCTCTAATTC 209 449 88 Antisense
GTCGTTATGCTCTAATTCGATACCG 309 473 95 Antisense
GCTCTAATTCGATACCGAGCTAATT 84 301 103 Antisense
TTCGATACCGAGCTAATTTTAAACA 433 695 110 Antisense
AATTTCAATTCTTTCAAGCTTCAAC 403 175 134 Antisense
TCTTTCAAGCTTCAACATTTATCTG 94 615 143 Antisense
GAATATGTTAGTTAGTACTCACAAA 244 327 193 Antisense
Sequence Source Affymetrix Proprietary Database