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[174342_at]

Description C34624_rc /REP_DB=TREMBL Accession /GB=C34624 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk413b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 46      6grp_total > 52      4grp_total > 02      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11595
1 2 3 4 range
A 2597.8
(-2.5)
P 		2687.4
(-2.5)
P 		1879.3
(-3)
P 		11105.7
(3)
P 		9226
B 1883.9
(-3)
P 		2355.1
(-2.7)
P 		2158.9
(-2.8)
P 		12776.3
(3)
P 		10892
C 3039.3
(-2.5)
P 		2055.9
(-3)
P 		2524
(-2.8)
P 		13474
(3)
P 		11418
avr 2507
(-2.8) 		2366.1
(-2.9) 		2187.4
(-3) 		12452
(3) 		10265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2799
1 2 3 4 5 6 range
A 1518
(-3)
P 		2285.3
(-0.9)
P 		3761.8
(3)
P 		2621.5
(-0)
P 		1738.4
(-2.4)
P 		1822.9
(-2.2)
P 		2244
B 2682.9
(-2.3)
P 		2701.8
(-2.3)
P 		4316.8
(3)
P 		3092.3
(-1)
P 		3127.5
(-0.9)
P 		2474.6
(-3)
P 		1842
C 2657.2
(1.3)
P 		2572.9
(0.5)
P 		2219.5
(-3)
P 		2565.2
(0.4)
P 		2803.7
(2.7)
P 		2832.6
(3)
P 		613
avr 2286
(-3) 		2520
(-1.8) 		3432.7
(3) 		2759.7
(-0.5) 		2556.5
(-1.6) 		2376.7
(-2.5) 		1147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2231
1 2 3 4 range
A 945.8
(-0.6)
P 		583.4
(-2.5)
P 		491.3
(-3)
P 		1625.7
(3)
P 		1134
B 600.7
(-2.7)
P 		581.7
(-2.8)
P 		500.3
(-3)
P 		2722.6
(3)
P 		2222
C 1006.1
(-1.5)
P 		591.1
(-3)
P 		879.7
(-2)
P 		2271.9
(3)
P 		1681
avr 850.9
(-2) 		585.4
(-3) 		623.8
(-2.9) 		2206.7
(3) 		1621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 991
1 2 3 4 5 6 range
A 279.8
(-3)
P 		812.8
(2.9)
P 		819.2
(3)
P 		664.9
(1.3)
P 		524.6
(-0.3)
P 		443.8
(-1.2)
P 		539
B 933.5
(-1.5)
P 		899.3
(-1.9)
P 		1048.2
(0)
P 		819
(-3)
P 		1270.7
(3)
P 		922.8
(-1.6)
P 		452
C 984.9
(3)
P 		785.1
(0.4)
P 		564.9
(-2.4)
P 		515.9
(-3)
P 		907.2
(2)
P 		948.2
(2.5)
P 		469
avr 732.7
(-1.3) 		832.4
(1.2) 		810.8
(0.7) 		666.6
(-3) 		900.8
(3) 		771.6
(-0.3) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21504
Sequence Type Exemplar sequence
Representative Public ID C34624 NCBI
Target Description C34624_rc /REP_DB=TREMBL Accession /GB=C34624 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk413b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069373 NCBI Caenorhabditis elegans K07F5.15 (K07F5.15) mRNA, complete cds. 11/11 None
GENEFINDER00000004266 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9865597:9866053:1 11/11 None
K07F5.15.1 ENSEMBL cdna:known chromosome:CEL140:IV:9865049:9866136:1 gene:K07F5.15 11/11 None
K07F5.15.3 ENSEMBL cdna:known chromosome:CEL140:IV:9865051:9866125:1 gene:K07F5.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004258 7/11 Cross Hyb Matching Probes None
K07F5.15.2 7/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9865726-9866055(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07F5.15
Entrez Gene 177838 Entrez gene
WormBase CE29595 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HU35KSUBA:R78190_AT chromosome 1 open reading frame 119 hs
HU35KSUBC:RC_AA460653_AT chromosome 1 open reading frame 119 hs
U133_X3P:HS.82933.0.A2_3P_AT chromosome 1 open reading frame 119 hs
HG-U133_PLUS_2:222495_AT chromosome 1 open reading frame 119 hs
HG-U133B:222495_AT chromosome 1 open reading frame 119 hs
HG-U95C:65958_AT chromosome 1 open reading frame 119 hs
HG-U95E:87950_AT chromosome 1 open reading frame 119 hs
U133_X3P:HS2.406889.1.S1_3P_S_AT Chromosome 1 open reading frame 119 hs
HG-U133_PLUS_2:1559116_S_AT Chromosome 1 open reading frame 119 hs
HG-U95C:52567_AT Chromosome 1 open reading frame 119 hs
HU35KSUBC:RC_H94026_AT Chromosome 1 open reading frame 119 hs
MG-U74BV2:162816_AT RIKEN cDNA 2010200O16 gene mm
MOE430B:1452998_AT RIKEN cDNA 2010200O16 gene mm
MOUSE430_2:1452998_AT RIKEN cDNA 2010200O16 gene mm
MOE430B:1429042_AT RIKEN cDNA 2010200O16 gene mm
MOUSE430_2:1429042_AT RIKEN cDNA 2010200O16 gene mm
RG-U34B:RC_AI013181_AT similar to RIKEN cDNA 2010200O16 rn
RAE230B:1377964_AT similar to RIKEN cDNA 2010200O16 rn
RAT230_2:1377964_AT similar to RIKEN cDNA 2010200O16 rn
RAE230B:1393186_AT similar to RIKEN cDNA 2010200O16 rn
RAT230_2:1393186_AT similar to RIKEN cDNA 2010200O16 rn
Protein Similarities
Method ID Description E-Value
blast CAD01085 Hypothetical protein K07F5.15 [Caenorhabditis elegans] ref|NP_501774.1| K07F5.15 [Caenorhabditis elegans] 2.0E-34
blast AAH77152 Hypothetical protein LOC445304 [Danio rerio] ref|NP_001003761.1| hypothetical protein LOC445304 [Danio rerio] 1.0E-24
blast NP_001016348 hypothetical protein LOC549102 [Xenopus tropicalis] gb|AAH77323.1| MGC80286 protein [Xenopus laevis] 8.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR009653 EMBL-EBI Protein of unknown function DUF1242 1.3E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501774.1 2 7-29,49-71
K07F5.15.1 2 7-29,49-71
K07F5.15.3 2 7-29,49-71
Sequence
Target Sequence 
>C. ELEGANS:174342_AT
ttcgttcgctaaaaacaatggttcaaggaaagctcaagcaaaagacagccttgccaaaag
gtgtcaaacaaaaggttaagaaggccaagaatccaggacaaccaaagaagggaaaattct
tgcacattgctcctaagaaggctcatatcattgaagcagaaaaagttgctgcccatgtca
ccaaagtcatcaacgacaaaaacgaggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTTCGCTAAAAACAATGGTTCA 215 695 41 Antisense
AATGGTTCAAGGAAAGCTCAAGCAA 454 163 57 Antisense
GCTCAAGCAAAAGACAGCCTTGCCA 175 299 72 Antisense
GACAGCCTTGCCAAAAGGTGTCAAA 641 367 84 Antisense
AGAAGGCCAAGAATCCAGGACAACC 372 73 119 Antisense
AGGGAAAATTCTTGCACATTGCTCC 643 57 149 Antisense
GCACATTGCTCCTAAGAAGGCTCAT 122 317 162 Antisense
GAAGGCTCATATCATTGAAGCAGAA 688 333 177 Antisense
AGAAAAAGTTGCTGCCCATGTCACC 534 71 198 Antisense
GCCCATGTCACCAAAGTCATCAACG 158 287 211 Antisense
GTCATCAACGACAAAAACGAGGAGA 126 463 226 Antisense
Sequence Source Affymetrix Proprietary Database