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[174341_at]

Description C35861_rc /REP_DB=TREMBL Accession /GB=C35861 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk449f7 : 3prime end, single read.
Cluster 6grp_total > 66      4grp_total > 34      6grp_cgc > 48      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 26.6
(-2.9)
A 		61.3
(3)
A 		26
(-3)
A 		52.7
(1.5)
A 		35
B 3.9
(-3)
A 		43.9
(3)
A 		33.5
(1.4)
A 		33.9
(1.5)
A 		40
C 8.1
(-3)
A 		29.4
(0.7)
A 		43.1
(3)
A 		30.8
(0.9)
A 		35
avr 12.9
(-3) 		44.9
(3) 		34.2
(1) 		39.1
(1.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 4.8
(-2.9)
A 		20.1
(0.5)
A 		21.9
(0.9)
A 		4.5
(-3)
A 		21.2
(0.8)
A 		31.2
(3)
A 		27
B 5.9
(-3)
A 		31.6
(1.9)
A 		15.2
(-1.2)
A 		37.5
(3)
A 		6.5
(-2.9)
A 		30.5
(1.7)
A 		32
C 28.2
(0.2)
A 		8.1
(-2.8)
A 		10.6
(-2.4)
A 		6.5
(-3)
A 		16.9
(-1.4)
A 		46.6
(3)
A 		40
avr 13
(-3) 		19.9
(-1.2) 		15.9
(-2.2) 		16.2
(-2.2) 		14.9
(-2.5) 		36.1
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.7
(-0.3)
A 		13.3
(3)
A 		6.8
(-3)
A 		7.7
(-2.2)
A 		7
B 1.2
(-3)
A 		10.8
(3)
A 		7.8
(1.1)
A 		7.2
(0.7)
A 		10
C 2.7
(-3)
A 		8.5
(-0.2)
A 		15
(3)
A 		5.2
(-1.8)
A 		12
avr 4.5
(-3) 		10.9
(3) 		9.9
(2.1) 		6.7
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.9
(-3)
A 		7.1
(2.6)
A 		4.8
(0.5)
A 		1.1
(-2.8)
A 		6.4
(1.9)
A 		7.6
(3)
A 		7
B 2
(-3)
A 		10.5
(2.4)
A 		3.7
(-1.9)
A 		9.9
(2)
A 		2.6
(-2.6)
A 		11.4
(3)
A 		9
C 10.5
(0.9)
A 		2.5
(-2.5)
A 		2.7
(-2.4)
A 		1.3
(-3)
A 		5.5
(-1.2)
A 		15.6
(3)
A 		14
avr 4.5
(-2.4) 		6.7
(-0.7) 		3.7
(-3) 		4.1
(-2.7) 		4.8
(-2.2) 		11.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20659
Sequence Type Exemplar sequence
Representative Public ID C35861 NCBI
Target Description C35861_rc /REP_DB=TREMBL Accession /GB=C35861 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk449f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061606 NCBI Caenorhabditis elegans C08E3.3 (C08E3.3) mRNA, complete cds. 11/11 A 
C08E3.3 ENSEMBL cdna:known chromosome:CEL140:II:1604670:1606147:-1 gene:C08E3.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042043 3/11 Cross Hyb Matching Probes None
GENEFINDER00000042067 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1604678-1605007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-33
Ensembl C08E3.3
Entrez Gene 173533 Entrez gene
SwissProt O17193 EMBL-EBI
WormBase CE28531 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 1.0E-152
blast AAB66200 Hypothetical protein F45C12.11 [Caenorhabditis elegans] ref|NP_494049.1| F45C12.11 [Caenorhabditis elegans] 3.0E-48
blast CAE72470 Hypothetical protein CBG19644 [Caenorhabditis briggsae] 9.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.6E-32
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.9E-26
Sequence
Target Sequence 
>C. ELEGANS:174341_AT
aggaaacagctccgaagtcactctcagctcaatcgaccccaacgacttccagaactttct
ggaagttctctacggccaccaggaagctatcacagacgagtcggtggagggtgtgcttct
cattgcagacatgtacaatgccaagttggtcacccaaaactgcgagaactttcttttcag
aggagcgggatctaagatgatgttgaagaaacagctgcagctggcctatcgctataactt
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAACAGCTCCGAAGTCACTCTC 219 55 19 Antisense
CCCAACGACTTCCAGAACTTTCTGG 662 257 56 Antisense
TCTACGGCCACCAGGAAGCTATCAC 132 611 87 Antisense
AGGAAGCTATCACAGACGAGTCGGT 450 51 99 Antisense
AGACGAGTCGGTGGAGGGTGTGCTT 377 69 112 Antisense
AGGGTGTGCTTCTCATTGCAGACAT 50 59 126 Antisense
GTACAATGCCAAGTTGGTCACCCAA 174 461 151 Antisense
TGGTCACCCAAAACTGCGAGAACTT 352 551 165 Antisense
GCGAGAACTTTCTTTTCAGAGGAGC 149 289 180 Antisense
GAAACAGCTGCAGCTGGCCTATCGC 479 355 226 Antisense
AGCTGGCCTATCGCTATAACTTGGA 662 81 237 Antisense
Sequence Source Affymetrix Proprietary Database