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[174340_at]

Description C53528_rc /REP_DB=TREMBL Accession /GB=C53528 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk320e1 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.1
(-3)
A 		38.9
(3)
A 		5.9
(-2.2)
A 		1.6
(-2.9)
A 		38
B 3.1
(-2.9)
A 		34
(3)
A 		14.8
(-0.7)
A 		2.6
(-3)
A 		31
C 0.7
(-3)
A 		2.4
(-2.8)
A 		44.7
(3)
P 		3.8
(-2.6)
A 		44
avr 1.6
(-3) 		25.1
(3) 		21.8
(2.2) 		2.7
(-2.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.5
(-3)
A 		32.1
(1.3)
A 		38.1
(2.2)
A 		43.8
(3)
A 		4.3
(-2.6)
A 		2.7
(-2.8)
A 		42
B 4.1
(-2.6)
A 		26.7
(1)
A 		1.3
(-3)
A 		5.2
(-2.4)
A 		39.2
(3)
A 		21.5
(0.2)
A 		38
C 21.3
(-0.5)
A 		50.4
(3)
A 		2.7
(-2.8)
A 		1.2
(-3)
A 		27.8
(0.2)
A 		22.5
(-0.4)
A 		49
avr 9
(-3) 		36.4
(3) 		14
(-1.9) 		16.7
(-1.3) 		23.8
(0.2) 		15.6
(-1.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.4
(-2.9)
A 		8.4
(3)
A 		1.5
(-2)
A 		0.2
(-3)
A 		8
B 1
(-2.7)
A 		8.4
(3)
A 		3.4
(-0.8)
A 		0.6
(-3)
A 		8
C 0.2
(-3)
A 		0.7
(-2.8)
A 		15.6
(3)
P 		0.6
(-2.8)
A 		15
avr 0.5
(-3) 		5.8
(2) 		6.8
(3) 		0.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.3
(-3)
A 		11.4
(3)
A 		8.3
(1.3)
A 		11.1
(2.8)
A 		1.3
(-2.5)
A 		0.7
(-2.8)
A 		11
B 1.4
(-2.6)
A 		8.9
(0.3)
A 		0.3
(-3)
A 		1.4
(-2.6)
A 		15.9
(3)
A 		8
(-0)
A 		16
C 7.9
(0)
A 		15.4
(3)
A 		0.7
(-2.8)
A 		0.2
(-3)
A 		9
(0.5)
A 		7.5
(-0.1)
A 		15
avr 3.2
(-2.9) 		11.9
(3) 		3.1
(-3) 		4.2
(-2.3) 		8.7
(0.8) 		5.4
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20043
Sequence Type Exemplar sequence
Representative Public ID C53528 NCBI
Target Description C53528_rc /REP_DB=TREMBL Accession /GB=C53528 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk320e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058376 NCBI Caenorhabditis elegans Y18H1A.8 (Y18H1A.8) mRNA, complete cds. 11/11 None
Y18H1A.8 ENSEMBL cdna:known chromosome:CEL140:I:758758:760431:1 gene:Y18H1A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:758873-760371(+) 94.29 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.8
Entrez Gene 171667 Entrez gene
SwissProt Q9BL87 EMBL-EBI
WormBase CE30211 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
42545 cell wall modification inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5618 cell wall inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30599 pectinesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490777 Y18H1A.8 [Caenorhabditis elegans] gb|AAK21511.2| Hypothetical protein Y18H1A.8 [Caenorhabditis elegans] 3.0E-86
blast AAC78168 Hypothetical protein K04F1.9 [Caenorhabditis elegans] ref|NP_503474.1| K04F1.9 [Caenorhabditis elegans] 1.0E-20
blast AAC78167 Hypothetical protein K04F1.8 [Caenorhabditis elegans] ref|NP_503475.1| K04F1.8 [Caenorhabditis elegans] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:174340_AT
gaggtgttcgacaacgttatcagtaaacaccattacgtgttccatacaaatgcaccacat
atgtatctcgttgaggctgaagataccaatgacggattgccaaagtttttggattcctat
ttcgagttatacatgatcatcgtccacgattgcacggataatgggaaatacaagttgttg
acagttgacttgggatcttattatatcaaggatgggcagtacgatgaaacacgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTGTTCGACAACGTTATCAGTA 499 401 26 Antisense
GTAAACACCATTACGTGTTCCATAC 199 457 48 Antisense
TACGTGTTCCATACAAATGCACCAC 15 649 59 Antisense
ATGCACCACATATGTATCTCGTTGA 630 43 75 Antisense
TCTCGTTGAGGCTGAAGATACCAAT 191 609 91 Antisense
GATACCAATGACGGATTGCCAAAGT 180 423 107 Antisense
TTGGATTCCTATTTCGAGTTATACA 390 709 134 Antisense
GAGTTATACATGATCATCGTCCACG 558 397 149 Antisense
CATCGTCCACGATTGCACGGATAAT 682 211 163 Antisense
GACAGTTGACTTGGGATCTTATTAT 194 369 205 Antisense
TGGGCAGTACGATGAAACACGCAAC 192 553 238 Antisense
Sequence Source Affymetrix Proprietary Database