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[174339_at]

Description C59782_rc /REP_DB=TREMBL Accession /GB=C59782 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 610.4
(-2)
P 		1188.7
(3)
P 		915.3
(0.6)
P 		491.3
(-3)
P 		697
B 646.5
(-1.7)
P 		1000.5
(3)
P 		810.4
(0.5)
P 		545.2
(-3)
P 		455
C 547
(-2.2)
P 		949.2
(2.9)
P 		959.5
(3)
P 		484.1
(-3)
P 		475
avr 601.3
(-1.9) 		1046.1
(3) 		895.1
(1.3) 		506.9
(-3) 		539

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 719
1 2 3 4 5 6 range
A 911.9
(3)
P 		548.2
(-0.3)
P 		396.8
(-1.6)
P 		266.3
(-2.8)
P 		242.7
(-3)
P 		322
(-2.3)
P 		669
B 911
(3)
P 		616
(0.4)
P 		465
(-0.9)
P 		328.6
(-2.1)
P 		223.7
(-3)
P 		331
(-2.1)
P 		687
C 942.2
(3)
P 		569
(-0.5)
P 		444.2
(-1.7)
P 		301.9
(-3)
P 		325.2
(-2.8)
P 		420.2
(-1.9)
P 		640
avr 921.7
(3) 		577.7
(-0.1) 		435.3
(-1.4) 		298.9
(-2.7) 		263.9
(-3) 		357.7
(-2.1) 		658
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 222.2
(1.8)
P 		258
(3)
P 		239.3
(2.4)
P 		71.9
(-3)
P 		186
B 206.2
(1.1)
P 		247.1
(3)
P 		187.8
(0.3)
P 		116.2
(-3)
P 		131
C 181.1
(-0.6)
P 		272.9
(1.5)
P 		334.4
(3)
P 		81.6
(-3)
P 		253
avr 203.2
(1) 		259.3
(3) 		253.8
(2.8) 		89.9
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 168.1
(1.7)
P 		195
(3)
P 		86.4
(-2.1)
P 		67.5
(-3)
P 		73.2
(-2.7)
P 		78.4
(-2.5)
P 		128
B 317
(3)
P 		205
(0.1)
P 		112.9
(-2.3)
P 		87
(-3)
P 		90.9
(-2.9)
P 		123.4
(-2.1)
P 		230
C 349.3
(3)
P 		173.6
(-0.7)
P 		113
(-1.9)
P 		60.7
(-3)
P 		105.2
(-2.1)
P 		140.7
(-1.3)
P 		289
avr 278.1
(3) 		191.2
(0.5) 		104.1
(-2.1) 		71.7
(-3) 		89.8
(-2.5) 		114.2
(-1.8) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22287
Sequence Type Exemplar sequence
Representative Public ID C59782 NCBI
Target Description C59782_rc /REP_DB=TREMBL Accession /GB=C59782 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59782
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59782 C59782_rc /REP_DB=TREMBL Accession /GB=C59782 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442f5 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17481506-17481786(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174339_AT
aaggttatcagccgggaggtacatcttgataagtactacttgctggaaactgattctctc
tgcacgtttttactagcacaactggcattcttcactaggtgattttctaggtgataagtt
tttatacagagaacataaacactggtcacctaaaaattgtctactttgcacgtctcaccc
aagtcagcctcgaagagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTTATCAGCCGGGAGGTACATC 692 159 32 Antisense
CAGCCGGGAGGTACATCTTGATAAG 509 197 40 Antisense
TACATCTTGATAAGTACTACTTGCT 185 645 51 Antisense
TACTTGCTGGAAACTGATTCTCTCT 514 645 68 Antisense
ATTCTCTCTGCACGTTTTTACTAGC 282 9 84 Antisense
GCACGTTTTTACTAGCACAACTGGC 161 315 93 Antisense
ACTAGCACAACTGGCATTCTTCACT 55 103 103 Antisense
CAACTGGCATTCTTCACTAGGTGAT 187 187 110 Antisense
GGTGATTTTCTAGGTGATAAGTTTT 528 499 129 Antisense
GAGAACATAAACACTGGTCACCTAA 292 391 160 Antisense
TCACCCAAGTCAGCCTCGAAGAGCT 142 623 206 Antisense
Sequence Source Affymetrix Proprietary Database