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[174338_at]

Description C54623_rc /REP_DB=TREMBL Accession /GB=C54623 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk396b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 10      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1986
1 2 3 4 range
A 1815.9
(0.5)
P 		945.6
(-3)
P 		1193.3
(-2)
P 		2427.6
(3)
P 		1482
B 1942
(0.7)
P 		1095.1
(-2)
P 		769
(-3)
P 		2691.3
(3)
P 		1922
C 1750.9
(0.5)
P 		704.9
(-3)
P 		831.8
(-2.6)
P 		2512.9
(3)
P 		1808
avr 1836.3
(0.4) 		915.2
(-3) 		931.4
(-2.9) 		2543.9
(3) 		1629

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2207
1 2 3 4 5 6 range
A 2119.6
(3)
P 		1812.5
(1.7)
P 		754.5
(-3)
P 		847.6
(-2.6)
P 		1285.7
(-0.7)
P 		1622.5
(0.8)
P 		1365
B 1546.2
(2.4)
P 		1379.9
(1.5)
P 		570.9
(-3)
P 		972.5
(-0.8)
P 		991.6
(-0.7)
P 		1647.8
(3)
P 		1077
C 2777.4
(3)
P 		1165.3
(-2.8)
P 		1109.3
(-3)
P 		1296.4
(-2.3)
P 		1255
(-2.5)
P 		1236.3
(-2.5)
P 		1668
avr 2147.7
(3) 		1452.6
(-0.1) 		811.6
(-3) 		1038.8
(-2) 		1177.4
(-1.4) 		1502.2
(0.1) 		1336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 661.2
(3)
P 		205.3
(-3)
P 		312
(-1.6)
P 		355.4
(-1)
P 		456
B 619.3
(3)
P 		270.5
(-1.7)
P 		178.2
(-3)
P 		573.5
(2.4)
P 		441
C 579.6
(3)
P 		202.7
(-3)
P 		289.9
(-1.6)
P 		423.7
(0.5)
P 		377
avr 620
(3) 		226.2
(-3) 		260
(-2.5) 		450.9
(0.4) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 891
1 2 3 4 5 6 range
A 390.7
(-0.2)
P 		644.6
(3)
P 		164.3
(-3)
P 		215
(-2.4)
P 		388
(-0.2)
P 		395
(-0.1)
P 		480
B 538
(2)
P 		459.3
(1)
P 		138.6
(-3)
P 		257.6
(-1.5)
P 		402.9
(0.3)
P 		614.4
(3)
P 		476
C 1029.5
(3)
P 		355.6
(-2.3)
P 		282.3
(-2.8)
P 		260.7
(-3)
P 		406.1
(-1.9)
P 		413.9
(-1.8)
P 		769
avr 652.7
(3) 		486.5
(0.8) 		195.1
(-3) 		244.4
(-2.4) 		399
(-0.3) 		474.4
(0.7) 		458
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20817
Sequence Type Exemplar sequence
Representative Public ID C54623 NCBI
Target Description C54623_rc /REP_DB=TREMBL Accession /GB=C54623 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk396b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062596 NCBI Caenorhabditis elegans VH1 dual-specificity phosphatase family member (vhp-1) (vhp-1) mRNA, complete cds. 11/11 None
F08B1.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:5322977:5340788:1 gene:F08B1.1 11/11 A 
F08B1.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:5322977:5340771:1 gene:F08B1.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173904 3 1 NM_062596 174338_at (11), 193148_at (11)
NM_062597 193148_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5340432-5340759(+) 91.74 100.0
Public Domain and Genome References
Ensembl F08B1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68299 Vh1 dual-specificity phosphatase family protein 1, isoform a [Caenorhabditis elegans] gb|AAS91377.1| VH1-like phosphatase 1 [Caenorhabditis elegans] ref|NP_494997.1| VH1 dual-specificity phosphatase family member (vhp-1) [Caenorhabditis elegans] sp|Q10038|VHP1_CAEEL Tyrosine-protein phosphatase vhp-1 (Vh1 dual-specificity phosphatase family protein 1) 0.0
blast CAE59080 Hypothetical protein CBG02372 [Caenorhabditis briggsae] 0.0
blast AAK68300 Vh1 dual-specificity phosphatase family protein 1, isoform b [Caenorhabditis elegans] ref|NP_494998.1| VH1 dual-specificity phosphatase family member (vhp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 3.7E-71
Sequence
Target Sequence 
>C. ELEGANS:174338_AT
gtgctcttgattttgagccctgacccccttccccaagttcttcttcatgaaaagcaatat
ttgaactcgtgatgttcgattctttccgtttcttttttatttttttttattttttatatc
ttgaatccattagagtatcccaattttatcaaccatgttactttatttgacattacattt
tttgtatataacccggcaaatttcatttatttataccattcaaccccaccaaccaaaaca
tcacccccaatttttcatttttaaacctctactgattctggtctagcctgacgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCTTGATTTTGAGCCCTGACC 263 479 14 Antisense
TTCCCCAAGTTCTTCTTCATGAAAA 610 697 42 Antisense
ACTCGTGATGTTCGATTCTTTCCGT 4 101 78 Antisense
TTGAATCCATTAGAGTATCCCAATT 131 703 134 Antisense
GTATCCCAATTTTATCAACCATGTT 330 455 148 Antisense
GTTACTTTATTTGACATTACATTTT 58 447 170 Antisense
TATATAACCCGGCAAATTTCATTTA 236 627 198 Antisense
CATTTATTTATACCATTCAACCCCA 430 215 217 Antisense
TTTTCATTTTTAAACCTCTACTGAT 105 675 265 Antisense
AACCTCTACTGATTCTGGTCTAGCC 558 147 277 Antisense
CTGATTCTGGTCTAGCCTGACGTAC 256 237 285 Antisense
Sequence Source Affymetrix Proprietary Database