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[174335_at]

Description C52036_rc /REP_DB=TREMBL Accession /GB=C52036 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g1 : 3prime end, single read.
Cluster 6grp_total > 92      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 20.8
(-3)
A 		34.3
(-1.2)
A 		41.3
(-0.3)
A 		65.7
(3)
A 		45
B 18
(1.3)
A 		22.8
(3)
A 		7.5
(-2.4)
A 		5.9
(-3)
A 		17
C 9.5
(-2.9)
A 		5.6
(-3)
A 		22.4
(-2.5)
A 		216.2
(3)
P 		211
avr 16.1
(-3) 		20.9
(-2.6) 		23.7
(-2.4) 		95.9
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 40.2
(0.2)
A 		14.6
(-3)
A 		62.5
(3)
A 		32.2
(-0.8)
A 		50.3
(1.5)
P 		31.1
(-0.9)
A 		48
B 18.5
(-0)
A 		26.8
(1.8)
A 		22.9
(0.9)
A 		4.8
(-3)
A 		32.4
(3)
A 		19.5
(0.2)
A 		28
C 13.2
(-1.5)
A 		32.8
(1.7)
A 		12.4
(-1.6)
A 		40.7
(3)
A 		19.8
(-0.4)
A 		3.8
(-3)
A 		37
avr 24
(-0.8) 		24.7
(-0.5) 		32.6
(2.4) 		25.9
(-0.1) 		34.2
(3) 		18.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 7.6
(-2.6)
A 		7.4
(-3)
A 		10.8
(3)
A 		9.6
(0.9)
A 		3
B 5.8
(3)
A 		5.6
(2.7)
A 		1.7
(-2.5)
A 		1.3
(-3)
A 		5
C 3.2
(-2.7)
A 		1.6
(-3)
A 		7.8
(-1.9)
A 		36.5
(3)
P 		35
avr 5.5
(-2.7) 		4.9
(-3) 		6.8
(-2) 		15.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.4
(-1.7)
A 		5.2
(-3)
A 		13.6
(2)
A 		8.2
(-1.2)
A 		15.2
(3)
P 		7.6
(-1.6)
A 		10
B 6.4
(-0.4)
A 		8.9
(0.8)
A 		5.6
(-0.8)
A 		1.3
(-3)
A 		13.2
(3)
A 		7.3
(0)
A 		12
C 4.9
(-0.5)
A 		10
(3)
A 		3.2
(-1.7)
A 		8.2
(1.8)
A 		6.4
(0.5)
A 		1.3
(-3)
A 		9
avr 6.2
(-2.2) 		8
(-0.5) 		7.5
(-1) 		5.9
(-2.5) 		11.6
(3) 		5.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21213
Sequence Type Exemplar sequence
Representative Public ID C52036 NCBI
Target Description C52036_rc /REP_DB=TREMBL Accession /GB=C52036 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C52036
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52036 C52036_rc /REP_DB=TREMBL Accession /GB=C52036 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g1 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10499120-10499398(+) 32.73 100.0
Sequence
Target Sequence 
>C. ELEGANS:174335_AT
ataactatatctcgtagcaaaaactacagtaattctttaattacttactgtagagcttgt
gtcgatttacgggctcgatttttgaaaagttacatcagggatattccatttttatccgtt
tcctcgtaatattttctcatttttttgcttaattttactactctatcgaaaaataaataa
ttttgattcatttcaatactcggcccgtaattcggaactacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACTATATCTCGTAGCAAAAACT 390 23 38 Antisense
AATTCTTTAATTACTTACTGTAGAG 371 173 68 Antisense
TACTTACTGTAGAGCTTGTGTCGAT 658 643 79 Antisense
TACTGTAGAGCTTGTGTCGATTTAC 398 647 83 Antisense
AAAGTTACATCAGGGATATTCCATT 125 123 123 Antisense
GATATTCCATTTTTATCCGTTTCCT 519 427 137 Antisense
TCCGTTTCCTCGTAATATTTTCTCA 188 595 152 Antisense
TGCTTAATTTTACTACTCTATCGAA 705 579 183 Antisense
TCATTTCAATACTCGGCCCGTAATT 660 213 225 Antisense
TCAATACTCGGCCCGTAATTCGGAA 611 633 230 Antisense
CTCGGCCCGTAATTCGGAACTACAG 240 231 236 Antisense
Sequence Source Affymetrix Proprietary Database