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[174334_at]

Description C31536_rc /REP_DB=TREMBL Accession /GB=C31536 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk284d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 655.4
(3)
P 		238.1
(-2.7)
P 		240
(-2.7)
P 		214.3
(-3)
P 		441
B 812.2
(3)
P 		403.3
(-0.7)
P 		280.6
(-1.8)
P 		146.4
(-3)
P 		666
C 668.3
(3)
P 		404.8
(-0.3)
P 		347.7
(-1.1)
P 		195.2
(-3)
P 		473
avr 712
(3) 		348.7
(-1.1) 		289.4
(-1.8) 		185.3
(-3) 		527

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 632.2
(3)
P 		412
(-0.2)
P 		259.8
(-2.4)
P 		217.7
(-3)
P 		320.8
(-1.5)
P 		309.4
(-1.7)
P 		415
B 701.8
(3)
P 		502.2
(0.8)
P 		266.7
(-1.8)
P 		340
(-1)
P 		260.8
(-1.9)
P 		157.1
(-3)
P 		545
C 566.6
(3)
P 		426.1
(0.8)
P 		297
(-1.1)
P 		213.3
(-2.4)
P 		174.8
(-3)
P 		231.8
(-2.1)
P 		392
avr 633.5
(3) 		446.8
(0.2) 		274.5
(-2.4) 		257
(-2.6) 		252.1
(-2.7) 		232.8
(-3) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 238.6
(3)
P 		51.7
(-2.4)
P 		62.7
(-2.1)
P 		31.4
(-3)
P 		207
B 259
(3)
P 		99.6
(-1.2)
P 		65
(-2.1)
P 		31.2
(-3)
P 		228
C 221.2
(3)
P 		116.4
(-0.3)
P 		121.2
(-0.2)
P 		32.9
(-3)
P 		188
avr 239.6
(3) 		89.2
(-1.3) 		83
(-1.5) 		31.8
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 116.5
(1)
P 		146.5
(3)
P 		56.6
(-2.9)
P 		55.2
(-3)
P 		96.8
(-0.3)
P 		75.3
(-1.7)
P 		91
B 244.2
(3)
P 		167.1
(0.5)
P 		64.8
(-2.8)
P 		90
(-2)
P 		106
(-1.5)
P 		58.6
(-3)
P 		186
C 210
(3)
P 		130
(0.1)
P 		75.6
(-1.8)
P 		42.9
(-3)
P 		56.6
(-2.5)
P 		77.6
(-1.8)
P 		167
avr 190.2
(3) 		147.9
(1) 		65.7
(-2.9) 		62.7
(-3) 		86.5
(-1.9) 		70.5
(-2.6) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22161
Sequence Type Exemplar sequence
Representative Public ID C31536 NCBI
Target Description C31536_rc /REP_DB=TREMBL Accession /GB=C31536 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk284d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076754 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-3) (rig-3) mRNA, complete cds. 11/11 None
C53B7.1 ENSEMBL cdna:known chromosome:CEL140:X:6853570:6860868:1 gene:C53B7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6860513-6860801(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rig-3
Ensembl C53B7.1
Entrez Gene 180958 Entrez gene
SwissProt Q18806 EMBL-EBI
WormBase CE06971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48277 Neuronal igcam protein 3 [Caenorhabditis elegans] ref|NP_509155.1| neuRonal IGCAM family member (rig-3) [Caenorhabditis elegans] 0.0
blast CAE65802 Hypothetical protein CBG10909 [Caenorhabditis briggsae] 0.0
blast XP_393339 PREDICTED: similar to EG:EG0007.3 [Apis mellifera] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:174334_AT
tagagttcattatctcatttccccctctattgtcaaaattgtaaatcggtgaatcttcta
tttttctatccataacttcatctaattaatcaatatcatcccctatctcgtcctcgaaat
tttcctattctttcattttgcacttttaaacaataattatagaattcattatcacattaa
cgcgtgaaatgcattttaaacgcaattccttctctttttatagattttcagttcgttctc
tctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGTTCATTATCTCATTTCCCCC 417 653 25 Antisense
ATTTCCCCCTCTATTGTCAAAATTG 142 17 41 Antisense
GGTGAATCTTCTATTTTTCTATCCA 196 501 72 Antisense
TTTCTATCCATAACTTCATCTAATT 437 671 87 Antisense
TCTAATTAATCAATATCATCCCCTA 696 611 105 Antisense
CCTATCTCGTCCTCGAAATTTTCCT 157 269 126 Antisense
TTTTCCTATTCTTTCATTTTGCACT 408 677 144 Antisense
AGAATTCATTATCACATTAACGCGT 613 75 185 Antisense
GCATTTTAAACGCAATTCCTTCTCT 71 239 215 Antisense
GCAATTCCTTCTCTTTTTATAGATT 135 323 226 Antisense
TAGATTTTCAGTTCGTTCTCTCTAG 508 653 245 Antisense
Sequence Source Affymetrix Proprietary Database