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[174333_s_at]

Description C52967_rc /REP_DB=TREMBL Accession /GB=C52967 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 61      6grp_total > 21      4grp_total > 53      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 498
1 2 3 4 range
A 678.2
(3)
P 		636.1
(2.4)
P 		526.1
(0.8)
P 		270
(-3)
P 		408
B 729.3
(2.5)
P 		760.3
(3)
P 		577.9
(0)
P 		393.4
(-3)
P 		367
C 768.4
(3)
P 		697.3
(1.8)
P 		620.9
(0.5)
P 		415.8
(-3)
P 		353
avr 725.3
(3) 		697.9
(2.6) 		575
(0.5) 		359.7
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 488.8
(1.1)
P 		609.9
(3)
P 		548.2
(2)
P 		432.2
(0.2)
P 		223.4
(-3)
P 		225.9
(-3)
P 		387
B 427.4
(-0.3)
P 		638.8
(3)
P 		558.8
(1.7)
P 		420.6
(-0.4)
P 		257
(-3)
P 		366.3
(-1.3)
P 		382
C 459.8
(0.4)
P 		616.6
(2.7)
P 		638.4
(3)
P 		511.7
(1.1)
P 		228.4
(-3)
P 		427.5
(-0.1)
P 		410
avr 458.7
(0.5) 		621.8
(3) 		581.8
(2.4) 		454.8
(0.4) 		236.3
(-3) 		339.9
(-1.4) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 246.9
(3)
P 		138.1
(-0.1)
P 		137.5
(-0.2)
P 		39.5
(-3)
P 		207
B 232.6
(3)
P 		187.8
(1.2)
P 		133.9
(-1)
P 		83.8
(-3)
P 		149
C 254.3
(3)
P 		200.5
(1.2)
P 		216.4
(1.8)
P 		70.1
(-3)
P 		184
avr 244.6
(3) 		175.5
(0.7) 		162.6
(0.3) 		64.5
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 90.1
(-1.7)
P 		216.9
(3)
P 		119.4
(-0.6)
P 		109.6
(-1)
P 		67.4
(-2.5)
P 		55
(-3)
P 		162
B 148.7
(-0.5)
P 		212.6
(3)
P 		135.7
(-1.3)
P 		111.4
(-2.6)
P 		104.4
(-3)
P 		136.6
(-1.2)
P 		108
C 170.4
(2.1)
P 		188.1
(3)
P 		162.5
(1.7)
P 		102.9
(-1.5)
P 		73.9
(-3)
P 		143.1
(0.6)
P 		114
avr 136.4
(-0.4) 		205.9
(3) 		139.2
(-0.2) 		108
(-1.7) 		81.9
(-3) 		111.6
(-1.6) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174333_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20377
Sequence Type Exemplar sequence
Representative Public ID C52967 NCBI
Target Description C52967_rc /REP_DB=TREMBL Accession /GB=C52967 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182084(11), NM_060004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182084 NCBI Caenorhabditis elegans F53B6.2b (F53B6.2) mRNA, complete cds. 11/11 A 
NM_060004 NCBI Caenorhabditis elegans F53B6.2a (F53B6.2) mRNA, complete cds. 11/11 A 
SNAP00000012064 ENSEMBL cdna:SNAP chromosome:CEL140:I:8939506:8943278:-1 11/11 None
GENEFINDER00000012077 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8939506:8948397:-1 11/11 None
F53B6.2b ENSEMBL cdna:known chromosome:CEL140:I:8939164:8945775:-1 gene:F53B6.2 11/11 A 
F53B6.2a ENSEMBL cdna:known chromosome:CEL140:I:8939287:8950382:-1 gene:F53B6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8941402-8941795(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53B6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56586 Hypothetical protein F53B6.2b [Caenorhabditis elegans] ref|NP_871884.1| F53B6.2b [Caenorhabditis elegans] 0.0
blast CAB03121 Hypothetical protein F53B6.2a [Caenorhabditis elegans] ref|NP_492405.3| F53B6.2a [Caenorhabditis elegans] 0.0
blast CAE66996 Hypothetical protein CBG12394 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 7.6E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492405.3 1 7-29
F53B6.2a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:174333_S_AT
aatgttgttgcttgtccagctacttggggacggcacaatggactgagtgctcacgttcat
gtgattctggtgaacgccgccgtcaagtttggtgtgagatccgagattctcgtggaaaaa
ctcaacgtcgtcctgatgtcgaatgtgatgcaaacacaaagccacaaactgtcgaggtct
gcagttttggttcctgttctcgaccggaattactatcaaatcgggtcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTGTTGCTTGTCCAGCTACTT 431 163 13 Antisense
TGGACTGAGTGCTCACGTTCATGTG 643 545 51 Antisense
TCATGTGATTCTGGTGAACGCCGCC 394 621 69 Antisense
CGCCGCCGTCAAGTTTGGTGTGAGA 691 253 87 Antisense
GGTGTGAGATCCGAGATTCTCGTGG 434 499 103 Antisense
AAACTCAACGTCGTCCTGATGTCGA 505 125 130 Antisense
CGTCCTGATGTCGAATGTGATGCAA 482 245 141 Antisense
AAGCCACAAACTGTCGAGGTCTGCA 347 149 171 Antisense
AGGTCTGCAGTTTTGGTTCCTGTTC 6 59 187 Antisense
GTTCCTGTTCTCGACCGGAATTACT 272 439 202 Antisense
GGAATTACTATCAAATCGGGTCTTT 429 531 218 Antisense
Sequence Source Affymetrix Proprietary Database