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[174332_s_at]

Description C36687_rc /REP_DB=TREMBL Accession /GB=C36687 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk471a9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_total > 77      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 866
1 2 3 4 range
A 316.5
(-2.4)
P 		269.2
(-2.7)
P 		231.3
(-3)
P 		1096.7
(3)
P 		865
B 273.3
(-2.8)
P 		333.7
(-2.1)
P 		250.3
(-3)
P 		829.9
(3)
P 		580
C 320.8
(-2.3)
P 		230.9
(-3)
P 		237.7
(-2.9)
P 		992.4
(3)
P 		762
avr 303.5
(-2.5) 		277.9
(-2.7) 		239.8
(-3) 		973
(3) 		733

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 161.8
(-3)
M 		208.1
(-1.8)
P 		269.9
(-0.3)
P 		231.9
(-1.2)
P 		257.6
(-0.6)
P 		401.9
(3)
P 		240
B 184
(-3)
P 		239
(-2.2)
P 		292.5
(-1.5)
P 		291.1
(-1.5)
P 		422.1
(0.3)
P 		621.5
(3)
P 		438
C 223.4
(-2.9)
P 		252.8
(-2.5)
P 		239
(-2.7)
P 		219.9
(-3)
P 		246.8
(-2.6)
P 		625.2
(3)
P 		405
avr 189.7
(-3) 		233.3
(-2.3) 		267.1
(-1.7) 		247.6
(-2) 		308.8
(-1) 		549.5
(3) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 115.2
(0.3)
P 		58.4
(-3)
P 		60.5
(-2.9)
P 		160.5
(3)
P 		102
B 87.2
(-1.5)
P 		82.4
(-1.8)
P 		58
(-3)
P 		176.9
(3)
P 		119
C 106.2
(-0.6)
P 		66.4
(-3)
P 		82.9
(-2)
P 		167.3
(3)
P 		101
avr 102.9
(-0.9) 		69.1
(-2.9) 		67.1
(-3) 		168.2
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 29.8
(-3)
M 		74
(0.9)
P 		58.8
(-0.4)
P 		58.8
(-0.4)
P 		77.7
(1.2)
P 		97.8
(3)
P 		68
B 64
(-3)
P 		79.5
(-2.4)
P 		71
(-2.7)
P 		77.1
(-2.5)
P 		171.5
(0.8)
P 		231.7
(3)
P 		168
C 82.8
(-1.6)
P 		77.1
(-1.8)
P 		60.8
(-2.4)
P 		44.2
(-3)
P 		79.8
(-1.7)
P 		209.3
(3)
P 		165
avr 58.9
(-3) 		76.9
(-2.1) 		63.5
(-2.8) 		60
(-2.9) 		109.7
(-0.5) 		179.6
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174332_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21210
Sequence Type Exemplar sequence
Representative Public ID C36687 NCBI
Target Description C36687_rc /REP_DB=TREMBL Accession /GB=C36687 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk471a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065434 NCBI Caenorhabditis elegans C16C10.2 (C16C10.2) mRNA, complete cds. 11/11 A 
SNAP00000043777 ENSEMBL cdna:SNAP chromosome:CEL140:III:4177637:4178629:-1 11/11 None
GENEFINDER00000043792 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4177637:4178629:-1 11/11 None
C16C10.2.2 ENSEMBL cdna:known chromosome:CEL140:III:4177599:4178637:-1 gene:C16C10.2 11/11 None
C16C10.2.1 ENSEMBL cdna:known chromosome:CEL140:III:4177599:4178635:-1 gene:C16C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4177608-4177997(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.2
Entrez Gene 175536 Entrez gene
SwissProt Q09462 EMBL-EBI
WormBase CE01493 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251371_AT expressed protein at
CANINE_2:CFA.21144.1.S1_S_AT similar to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) cfa
CANINE_2:CFAAFFX.5747.1.S1_AT similar to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) cfa
DROSOPHILA_2:1633091_AT dm
DROSGENOME1:154236_AT dm
CHICKEN:GGA.5254.1.S1_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) gga
HG-U133_PLUS_2:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133A:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133A_2:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBA:N35449_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBA:AA314256_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBD:RC_AA279763_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
U133_X3P:G7705808_3P_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U95B:48489_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133_PLUS_2:233760_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133B:233760_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U95E:87744_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
MG-U74BV2:114671_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430A:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430A_2:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430A:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430A_2:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430B:1459944_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1459944_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MU19KSUBA:TC22481_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) (Utp11l), mRNA mm
MU19KSUBA:TC22481_G_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) (Utp11l), mRNA mm
RAE230B:1395013_AT similar to CGI-94 protein rn
RAT230_2:1395013_AT similar to CGI-94 protein rn
YEAST_2:1774503_AT Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6364 rRNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30529 ribonucleoprotein complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86740 Hypothetical protein C16C10.2 [Caenorhabditis elegans] ref|NP_497835.1| C16C10.2 [Caenorhabditis elegans] sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) 1.0E-137
blast CAE72858 Hypothetical protein CBG20157 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR007144 EMBL-EBI Utp11 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174332_S_AT
attattggagctggtacgaaagaacaaaaagccgatcgtgtacgtcgtactcgatacaac
gagctcatcaaacgcgtggaacgtgccaaggagcttcaagtggtcgtggacaagctggaa
ttgaagaaacaattggcagctggaagcaaatcagaattgaagcctcaaaaggtcaaaaag
gcgaaagctatgcgagcagccgtctacaaatggacctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTGGAGCTGGTACGAAAGAAC 578 1 30 Antisense
AAAGCCGATCGTGTACGTCGTACTC 12 125 57 Antisense
GTGTACGTCGTACTCGATACAACGA 463 485 67 Antisense
GATACAACGAGCTCATCAAACGCGT 429 423 82 Antisense
TCAAACGCGTGGAACGTGCCAAGGA 62 629 97 Antisense
AGGAGCTTCAAGTGGTCGTGGACAA 347 55 118 Antisense
GTGGTCGTGGACAAGCTGGAATTGA 41 489 129 Antisense
ACAATTGGCAGCTGGAAGCAAATCA 373 115 158 Antisense
GAAGCAAATCAGAATTGAAGCCTCA 544 341 172 Antisense
GAAAGCTATGCGAGCAGCCGTCTAC 675 359 212 Antisense
GCAGCCGTCTACAAATGGACCTATG 640 313 225 Antisense
Sequence Source Affymetrix Proprietary Database