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[174331_at]

Description C59659_rc /REP_DB=TREMBL Accession /GB=C59659 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439h3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 24      6grp_total > 06      4grp_total > 47      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 159.6
(3)
P 		78
(-1.2)
P 		42
(-3)
P 		51.1
(-2.5)
A 		118
B 177.6
(3)
P 		65.7
(-3)
P 		66.3
(-3)
P 		86.3
(-1.9)
P 		112
C 171.3
(3)
P 		44.8
(-3)
P 		72.3
(-1.7)
P 		87.9
(-1)
P 		127
avr 169.5
(3) 		62.8
(-2.9) 		60.2
(-3) 		75.1
(-2.2) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 161.3
(3)
P 		154.9
(2.7)
P 		50.3
(-2.5)
P 		40.9
(-3)
P 		78.7
(-1.1)
P 		54.4
(-2.3)
P 		120
B 151.7
(3)
P 		103
(0.4)
P 		54.4
(-2.2)
P 		63.6
(-1.7)
P 		41.2
(-2.9)
P 		38.7
(-3)
P 		113
C 199.5
(3)
P 		104
(-0.3)
P 		105.8
(-0.3)
P 		63.2
(-1.8)
M 		82.3
(-1.1)
P 		27.9
(-3)
A 		172
avr 170.8
(3) 		120.6
(0.7) 		70.2
(-1.6) 		55.9
(-2.3) 		67.4
(-1.8) 		40.3
(-3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 58.1
(3)
P 		16.9
(-1.9)
P 		11
(-2.6)
P 		7.5
(-3)
A 		51
B 56.6
(3)
P 		16.2
(-2.9)
P 		15.4
(-3)
P 		18.4
(-2.6)
P 		41
C 56.7
(3)
P 		12.9
(-3)
P 		25.2
(-1.3)
P 		14.8
(-2.7)
P 		44
avr 57.1
(3) 		15.3
(-2.8) 		17.2
(-2.5) 		13.6
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 29.7
(-0.4)
P 		55.1
(3)
P 		11
(-2.9)
P 		10.4
(-3)
P 		23.8
(-1.2)
P 		13.2
(-2.6)
P 		45
B 52.8
(3)
P 		34.3
(0.2)
P 		13.2
(-3)
P 		16.8
(-2.5)
P 		16.7
(-2.5)
P 		14.4
(-2.8)
P 		40
C 73.9
(3)
P 		31.7
(-0.9)
P 		26.9
(-1.4)
P 		12.7
(-2.7)
M 		26.6
(-1.4)
P 		9.3
(-3)
A 		65
avr 52.1
(3) 		40.4
(1.2) 		17
(-2.3) 		13.3
(-2.8) 		22.4
(-1.5) 		12.3
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22240
Sequence Type Exemplar sequence
Representative Public ID C59659 NCBI
Target Description C59659_rc /REP_DB=TREMBL Accession /GB=C59659 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076563 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-6) (rgs-6) mRNA, complete cds. 11/11 None
C41G11.3 ENSEMBL cdna:known chromosome:CEL140:X:5720408:5728614:-1 gene:C41G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5720500-5720779(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rgs-6
Ensembl C41G11.3
Entrez Gene 180840 Entrez gene
SwissProt Q18563 EMBL-EBI
WormBase CE30895 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85744 Regulator of g protein signaling protein 6 [Caenorhabditis elegans] ref|NP_508964.2| Regulator of G protein Signaling family member (rgs-6) [Caenorhabditis elegans] sp|Q18563|RGS6_CAEEL Regulator of G-protein signaling rgs-6 0.0
blast T29512 hypothetical protein C41G11.2 - Caenorhabditis elegans 0.0
blast CAE68793 Hypothetical protein CBG14738 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 3.2E-20
Sequence
Target Sequence 
>C. ELEGANS:174331_AT
ttcctatttattttcattgaacgcaacctggagctagtgtttatgtattgtttataaatt
cgaaacataaacagtgtttttttttaaattcgtaatttttatgatatctctttatcatta
atcttttccatattttctttctatttcccatctaaacactttttgcaattctttctagtc
aatttcaattcctctcattctttccaactaccagtgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTATTTATTTTCATTGAACGCA 232 699 14 Antisense
CATTGAACGCAACCTGGAGCTAGTG 151 217 28 Antisense
GGAGCTAGTGTTTATGTATTGTTTA 550 521 43 Antisense
TCGTAATTTTTATGATATCTCTTTA 498 603 103 Antisense
ATCTCTTTATCATTAATCTTTTCCA 375 33 119 Antisense
ATCATTAATCTTTTCCATATTTTCT 225 31 127 Antisense
TTTCTTTCTATTTCCCATCTAAACA 596 671 147 Antisense
ATTTCCCATCTAAACACTTTTTGCA 69 17 156 Antisense
ACACTTTTTGCAATTCTTTCTAGTC 298 111 169 Antisense
TTCTTTCTAGTCAATTTCAATTCCT 435 691 182 Antisense
TCATTCTTTCCAACTACCAGTGTCT 56 619 208 Antisense
Sequence Source Affymetrix Proprietary Database